WormBase Tree Display for Gene: WBGene00013300
expand all nodes | collapse all nodes | view schema
| WBGene00013300 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lgc-7 | Paper_evidence | WBPaper00029376 | |||||
| Person_evidence | WBPerson1430 | ||||||||
| Sequence_name | Y57G11C.2 | ||||||||
| Molecular_name | Y57G11C.2 | ||||||||
| Y57G11C.2.1 | |||||||||
| CE36675 | |||||||||
| Other_name | CELE_Y57G11C.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lgc-7 | ||||||||
| DB_info | Database | AceView | gene | 4P481 | |||||
| WormQTL | gene | WBGene00013300 | |||||||
| WormFlux | gene | WBGene00013300 | |||||||
| NDB | locus_tag | CELE_Y57G11C.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013300|UniProtKB=O18228 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 190370 | |||||||
| RefSeq | protein | NM_070376.3 | |||||||
| TREEFAM | TREEFAM_ID | TF319821 | |||||||
| TrEMBL | UniProtAcc | O18228 | |||||||
| UniProt_GCRP | UniProtAcc | O18228 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 May 2007 16:58:23 | WBPerson2970 | Name_change | CGC_name | lgc-7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgc | ||||||||
| Allele (95) | |||||||||
| Strain | WBStrain00050961 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (31) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Automated_description | Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Human ortholog(s) of this gene implicated in irritable bowel syndrome. Is an ortholog of human HTR3A (5-hydroxytryptamine receptor 3A) and HTR3E (5-hydroxytryptamine receptor 3E). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9778 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5297) | ||||
| Molecular_info | Corresponding_CDS | Y57G11C.2 | |||||||
| Corresponding_CDS_history | Y57G11C.2:wp124 | ||||||||
| Corresponding_transcript | Y57G11C.2.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00066358 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057691 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037599 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021140 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022704 | ||||||||
| Expr1161103 | |||||||||
| Expr2013138 | |||||||||
| Expr2031370 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (26) | |||||||||
| Interaction (62) | |||||||||
| Map_info | Map | IV | Position | 12.3871 | Error | 0.005186 | |||
| Positive | Positive_clone | Y57G11C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
