WormBase Tree Display for Gene: WBGene00013307
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| WBGene00013307 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | melo-1 | Person_evidence | WBPerson6609 | |||||
| WBPerson1816 | |||||||||
| Sequence_name | Y57G11C.9 | ||||||||
| Molecular_name (16) | |||||||||
| Other_name | CELE_Y57G11C.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | melo-1 | ||||||||
| DB_info | Database | AceView | gene | 4P555 | |||||
| WormQTL | gene | WBGene00013307 | |||||||
| WormFlux | gene | WBGene00013307 | |||||||
| NDB | locus_tag | CELE_Y57G11C.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013307|UniProtKB=Q9U202 | |||||||
| family | PTHR15836 | ||||||||
| NCBI | gene | 178401 | |||||||
| RefSeq | protein | NM_070384.6 | |||||||
| NM_001276887.3 | |||||||||
| NM_070385.7 | |||||||||
| NM_001392443.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF350158 | |||||||
| TrEMBL | UniProtAcc | K8FDY2 | |||||||
| Q95Q12 | |||||||||
| Q9U203 | |||||||||
| Q9U202 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U202 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 May 2023 12:43:53 | WBPerson51134 | Name_change | CGC_name | melo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | melo | ||||||||
| Allele (81) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024164 | ||||||||
| 00024165 | |||||||||
| 00024166 | |||||||||
| 00098580 | |||||||||
| 00098581 | |||||||||
| 00120199 | |||||||||
| 00120200 | |||||||||
| 00120201 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00004698 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004699 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004700 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004702 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to be located in nucleoplasm. Is an ortholog of human PPHLN1 (periphilin 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57G11C.9a | |||||||
| Y57G11C.9b | |||||||||
| Y57G11C.9c | |||||||||
| Y57G11C.9d | |||||||||
| Corresponding_CDS_history | Y57G11C.9b:wp166 | ||||||||
| Corresponding_transcript | Y57G11C.9a.1 | ||||||||
| Y57G11C.9b.1 | |||||||||
| Y57G11C.9c.1 | |||||||||
| Y57G11C.9c.2 | |||||||||
| Y57G11C.9c.3 | |||||||||
| Y57G11C.9c.4 | |||||||||
| Y57G11C.9c.5 | |||||||||
| Y57G11C.9d.1 | |||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf646568 | ||||||||
| WBsf660938 | |||||||||
| WBsf660939 | |||||||||
| WBsf660940 | |||||||||
| WBsf660941 | |||||||||
| WBsf998636 | |||||||||
| WBsf229530 | |||||||||
| WBsf229531 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037612 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057712 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057711 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000221 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021256 | ||||||||
| Expr1035935 | |||||||||
| Expr1161139 | |||||||||
| Expr2008079 | |||||||||
| Expr2026317 | |||||||||
| Drives_construct | WBCnstr00029697 | ||||||||
| Construct_product | WBCnstr00029697 | ||||||||
| Microarray_results (47) | |||||||||
| Expression_cluster (153) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Positive | Positive_clone | Y57G11C | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 12.4488 | |||||||
| Reference | WBPaper00038491 | ||||||||
| Method | Gene |
