WormBase Tree Display for Gene: WBGene00013422
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| WBGene00013422 | SMap | S_parent | Sequence | Y66A7AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | popl-5 | Person_evidence | WBPerson3778 | |||||
| Sequence_name | Y66A7A.2 | ||||||||
| Molecular_name | Y66A7A.2a | ||||||||
| Y66A7A.2a.1 | |||||||||
| CE22751 | |||||||||
| Y66A7A.2b | |||||||||
| CE46435 | |||||||||
| Y66A7A.2b.1 | |||||||||
| Other_name | CELE_Y66A7A.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | popl-5 | ||||||||
| DB_info | Database | AceView | gene | 3M576 | |||||
| WormQTL | gene | WBGene00013422 | |||||||
| WormFlux | gene | WBGene00013422 | |||||||
| NDB | locus_tag | CELE_Y66A7A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013422|UniProtKB=G5EF59 | |||||||
| family | PTHR10993 | ||||||||
| NCBI | gene | 176577 | |||||||
| RefSeq | protein | NM_001268200.3 | |||||||
| NM_001268199.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF317496 | |||||||
| TrEMBL | UniProtAcc | G5EF59 | |||||||
| G2HK18 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EF59 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Nov 2019 11:04:57 | WBPerson1983 | Name_change | CGC_name | popl-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | popl | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00052062 | ||||||||
| WBStrain00052060 | |||||||||
| WBStrain00049380 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP3854 | ||||||||
| CEOP3724 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00044130 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Concise_description | Y66A7A.2 encodes an ortholog of Pop5, a protein subunit shared by theendoribonucleases RNase MRP and RNAse P; RNAse MRP cleavesmitochondrial RNA in mitochondrial DNA synthesis, nucleolar pre-rRNA inribosome synthesis, and at least one mRNA (CLB2) involved in cell-cycleregulation; RNAse P cleaves tRNA precursors to produce their mature 5'end; Y66A7A.2 is evolutionarily ubiquitous among eukaryotes. | Paper_evidence | WBPaper00028606 | |||||
| WBPaper00028843 | |||||||||
| WBPaper00028845 | |||||||||
| WBPaper00028925 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 06 Jan 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ribonuclease P RNA binding activity and ribonuclease P activity. Predicted to be involved in rRNA processing and tRNA processing. Predicted to be located in nucleolus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Is an ortholog of human POP5 (POP5 homolog, ribonuclease P/MRP subunit). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y66A7A.2a | |||||||
| Y66A7A.2b | |||||||||
| Corresponding_transcript | Y66A7A.2a.1 | ||||||||
| Y66A7A.2b.1 | |||||||||
| Other_sequence | MH10043 | ||||||||
| FG350781.1 | |||||||||
| CBC09807_1 | |||||||||
| MH02731 | |||||||||
| DN557937.1 | |||||||||
| LSC00923_1 | |||||||||
| CJC10938_1 | |||||||||
| Associated_feature | WBsf994399 | ||||||||
| WBsf227580 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057919 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057920 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037712 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021248 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022404 | ||||||||
| Expr1035995 | |||||||||
| Expr1161354 | |||||||||
| Expr2008171 | |||||||||
| Expr2026411 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (70) | |||||||||
| Interaction | WBInteraction000179420 | ||||||||
| WBInteraction000201683 | |||||||||
| WBInteraction000242531 | |||||||||
| WBInteraction000300297 | |||||||||
| WBInteraction000354728 | |||||||||
| WBInteraction000426670 | |||||||||
| Map_info | Map | III | Position | 10.0179 | |||||
| Positive | Positive_clone | Y66A7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
