WormBase Tree Display for Gene: WBGene00013493
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| WBGene00013493 | SMap | S_parent | Sequence | Y70C5C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-9 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y70C5C.2 | ||||||||
| Molecular_name | Y70C5C.2 | ||||||||
| Y70C5C.2.1 | |||||||||
| CE35697 | |||||||||
| Other_name | CELE_Y70C5C.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-9 | ||||||||
| DB_info | Database | AceView | gene | 5R182 | |||||
| WormQTL | gene | WBGene00013493 | |||||||
| WormFlux | gene | WBGene00013493 | |||||||
| NDB | locus_tag | CELE_Y70C5C.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013493|UniProtKB=O62498 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 190567 | |||||||
| RefSeq | protein | NM_074826.5 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | O62498 | |||||||
| UniProt_GCRP | UniProtAcc | O62498 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (56) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (17) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including skn-1; lin-4; and lin-14 based on tiling array; microarray; and RNA-seq studies. Is affected by twenty-three chemicals including aldicarb; tryptophan; and 1-methylnicotinamide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y70C5C.2 | |||||||
| Corresponding_CDS_history | Y70C5C.2:wp109 | ||||||||
| Corresponding_transcript | Y70C5C.2.1 | ||||||||
| Associated_feature | WBsf1002503 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022496 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058116 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027281 | ||||||||
| Expr1161538 | |||||||||
| Expr2010227 | |||||||||
| Expr2028469 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | V | Position | 11.0532 | Error | 0.004214 | |||
| Positive | Positive_clone | Y70C5C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
