WormBase Tree Display for Gene: WBGene00013677
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| WBGene00013677 | SMap | S_parent | Sequence | Y105E8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | yars-1 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | Y105E8A.19 | ||||||||
| Molecular_name | Y105E8A.19 | ||||||||
| Y105E8A.19.1 | |||||||||
| CE33722 | |||||||||
| Other_name | Y105E8E.u | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y105E8E.v | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y105E8A.19 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | yars-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 May 2015 13:52:23 | WBPerson2970 | Name_change | CGC_name | yars-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | yars | ||||||||
| Allele (278) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP1736 | ||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00002153 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity and tyrosine-tRNA ligase activity. Predicted to be involved in tyrosyl-tRNA aminoacylation. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Is an ortholog of human YARS1 (tyrosyl-tRNA synthetase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0024189 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12840) | ||||
| DOID:0110199 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12840) | ||||||
| Molecular_info | Corresponding_CDS | Y105E8A.19 | |||||||
| Corresponding_CDS_history | Y105E8A.19:wp98 | ||||||||
| Corresponding_transcript | Y105E8A.19.1 | ||||||||
| Other_sequence (68) | |||||||||
| Associated_feature | WBsf665125 | ||||||||
| WBsf220617 | |||||||||
| WBsf220618 | |||||||||
| WBsf220619 | |||||||||
| WBsf220620 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055222 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055221 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036507 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024553 | ||||||||
| Expr1036107 | |||||||||
| Expr1158755 | |||||||||
| Expr2018115 | |||||||||
| Expr2036252 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | I | Position | 25.7357 | |||||
| Positive | Positive_clone | Y105E8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
