WormBase Tree Display for Gene: WBGene00013855
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| WBGene00013855 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | cubn-1 | Person_evidence | WBPerson7514 | |||||
| Sequence_name | ZC116.3 | ||||||||
| Molecular_name | ZC116.3 | ||||||||
| ZC116.3.1 | |||||||||
| CE42882 | |||||||||
| Other_name | CELE_ZC116.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cubn-1 | ||||||||
| DB_info | Database | AceView | gene | 5N107 | |||||
| WormQTL | gene | WBGene00013855 | |||||||
| WormFlux | gene | WBGene00013855 | |||||||
| NDB | locus_tag | CELE_ZC116.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013855|UniProtKB=Q20911 | |||||||
| family | PTHR45645 | ||||||||
| NCBI | gene | 179729 | |||||||
| RefSeq | protein | NM_073756.7 | |||||||
| SwissProt | UniProtAcc | Q20911 | |||||||
| UniProt_GCRP | UniProtAcc | Q20911 | |||||||
| OMIM | gene | 602997 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Jul 2008 09:36:01 | WBPerson4025 | Event | Acquires_merge | WBGene00044214 | ||||
| 3 | 06 Feb 2019 16:53:24 | WBPerson1983 | Name_change | CGC_name | cubn-1 | ||||
| Acquires_merge | WBGene00044214 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cubn | ||||||||
| Allele (206) | |||||||||
| Strain | WBStrain00032119 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069534 | ||||||||
| 00069535 | |||||||||
| 00069536 | |||||||||
| 00069537 | |||||||||
| 00120604 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001106 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004963 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009114 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010134 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013498 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022816 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | ZC116.3 is orthologous to the human gene CUBILIN (CUBN; OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100). | Paper_evidence | WBPaper00004103 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in lipid metabolic process and protein transport. Predicted to be located in extracellular region. Expressed in tail. Human ortholog(s) of this gene implicated in coronary artery disease. Is an ortholog of human CUBN (cubilin). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0009853 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2548) | ||||
| DOID:10591 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2548) | ||||||
| DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2548) | ||||||
| Molecular_info | Corresponding_CDS | ZC116.3 | |||||||
| Corresponding_CDS_history | ZC116.3:wp185 | ||||||||
| ZC116.3:wp193 | |||||||||
| Corresponding_transcript | ZC116.3.1 | ||||||||
| Other_sequence | JI175685.1 | ||||||||
| JI170132.1 | |||||||||
| JI168540.1 | |||||||||
| JI174081.1 | |||||||||
| JI240348.1 | |||||||||
| Dviv_isotig26396 | |||||||||
| Associated_feature | WBsf647389 | ||||||||
| WBsf661918 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058720 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058718 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram478 | ||||||||
| Expr7149 | |||||||||
| Expr1025049 | |||||||||
| Expr1036195 | |||||||||
| Expr1162141 | |||||||||
| Expr2008542 | |||||||||
| Expr2026780 | |||||||||
| Drives_construct | WBCnstr00003236 | ||||||||
| WBCnstr00029499 | |||||||||
| Construct_product | WBCnstr00029499 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (158) | |||||||||
| Interaction | WBInteraction000167360 | ||||||||
| WBInteraction000273748 | |||||||||
| WBInteraction000426431 | |||||||||
| WBInteraction000454964 | |||||||||
| Map_info | Map | V | Position | 4.52978 | |||||
| Positive | Positive_clone | ZC116 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059494 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
