WormBase Tree Display for Gene: WBGene00014012
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| WBGene00014012 | SMap | S_parent | Sequence | ZK632 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | riok-3 | Person_evidence | WBPerson2149 | |||||
| Sequence_name | ZK632.3 | ||||||||
| Molecular_name | ZK632.3 | ||||||||
| ZK632.3.1 | |||||||||
| CE00420 | |||||||||
| Other_name | CELE_ZK632.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | riok-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Mar 2009 16:48:10 | WBPerson9133 | Name_change | CGC_name | riok-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | riok | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00001314 | ||||||||
| WBStrain00032864 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3628 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00019698 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00013688 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | riok-3 encodes a putative RIO kinase orthologous to human RIOK3 (OMIM:603579); riok-3 is expressed in larval and adult intestine. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00031006 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be located in cytosol. Predicted to be part of preribosome, small subunit precursor. Expressed in intestine. Is an ortholog of human RIOK3 (RIO kinase 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK632.3 | |||||||
| Corresponding_transcript | ZK632.3.1 | ||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf034288 | ||||||||
| WBsf651407 | |||||||||
| WBsf667329 | |||||||||
| WBsf227371 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022090 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006071 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114528 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038375 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059571 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114529 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram542 | ||||||||
| Expr7229 | |||||||||
| Expr1017289 | |||||||||
| Expr1036262 | |||||||||
| Expr1162989 | |||||||||
| Expr2015363 | |||||||||
| Expr2033597 | |||||||||
| Drives_construct | WBCnstr00002207 | ||||||||
| WBCnstr00029380 | |||||||||
| Construct_product | WBCnstr00029380 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | III | Position | 1.08174 | Error | 0.003556 | |||
| Positive | Positive_clone | ZK632 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00038076 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045510 | |||||||||
| WBPaper00046459 | |||||||||
| WBPaper00049703 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057312 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
