WormBase Tree Display for Gene: WBGene00014139
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| WBGene00014139 | SMap | S_parent | Sequence | ZK896 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nstp-5 | Person_evidence | WBPerson2553 | |||||
| WBPerson261 | |||||||||
| Sequence_name | ZK896.9 | ||||||||
| Molecular_name | ZK896.9a | ||||||||
| ZK896.9a.1 | |||||||||
| CE15465 | |||||||||
| ZK896.9b | |||||||||
| CE45569 | |||||||||
| ZK896.9b.1 | |||||||||
| Other_name | CELE_ZK896.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nstp-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Feb 2011 15:09:46 | WBPerson2970 | Name_change | CGC_name | nstp-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nstp | ||||||||
| Allele (164) | |||||||||
| Strain | WBStrain00032934 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008286 | ||||||||
| 00008287 | |||||||||
| 00008288 | |||||||||
| 00008289 | |||||||||
| 00008290 | |||||||||
| 00120857 | |||||||||
| 00120858 | |||||||||
| 00120859 | |||||||||
| 00120860 | |||||||||
| Contained_in_operon | CEOP4666 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00005153 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015404 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019451 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015038 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022577 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018414 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022721 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ZK896.9 encodes a Golgi apparatus transporter for UDP-glucose, UDP-galactose, UDP-N-acetylglucosamine (UDP-GlcNAc), and UDP-N-acetylgalactosamine (UDP-GalNAc); ZK896.9 is orthologous to human SLC35A3 (OMIM:605632) and paralogous to C03H5.2 and SRF-3; ZK896.9 has no obvious function in RNAi assays, but this could reflect genetic redundancy with its paralogs; ZK896.9 activity has been experimentally confirmed by heterologous expression in budding yeast, Chinese hamster cells, and Giardia lamblia. | Paper_evidence | WBPaper00030855 | |||||
| WBPaper00031606 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 15 Jul 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport and carbohydrate transport. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIm. Is an ortholog of human SLC35A2 (solute carrier family 35 member A2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070265 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11022) | ||||
| Molecular_info | Corresponding_CDS | ZK896.9a | |||||||
| ZK896.9b | |||||||||
| Corresponding_transcript | ZK896.9a.1 | ||||||||
| ZK896.9b.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature | WBsf660845 | ||||||||
| WBsf998260 | |||||||||
| WBsf998261 | |||||||||
| WBsf1018448 | |||||||||
| WBsf229338 | |||||||||
| WBsf229339 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00075464 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059813 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075463 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038492 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022222 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012935 | ||||||||
| Expr1036333 | |||||||||
| Expr1163243 | |||||||||
| Expr2014500 | |||||||||
| Expr2032739 | |||||||||
| Drives_construct | WBCnstr00029279 | ||||||||
| Construct_product | WBCnstr00029279 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (67) | |||||||||
| Interaction | WBInteraction000008516 | ||||||||
| WBInteraction000137094 | |||||||||
| WBInteraction000325789 | |||||||||
| WBInteraction000343474 | |||||||||
| WBInteraction000392055 | |||||||||
| WBInteraction000447799 | |||||||||
| WBInteraction000580877 | |||||||||
| Map_info | Map | IV | Position | 6.38155 | Error | 0.003369 | |||
| Positive | Positive_clone | ZK896 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00031606 | |||||||||
| WBPaper00037686 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
