WormBase Tree Display for Gene: WBGene00015473
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| WBGene00015473 | SMap | S_parent | Sequence | C05D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C05D9.4 | |||||||
| Molecular_name | C05D9.4 | ||||||||
| C05D9.4.1 | |||||||||
| CE53304 | |||||||||
| Other_name | CELE_C05D9.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | C05D9.4 | ||||||||
| DB_info | Database | AceView | gene | XB725 | |||||
| WormQTL | gene | WBGene00015473 | |||||||
| WormFlux | gene | WBGene00015473 | |||||||
| NDB | locus_tag | CELE_C05D9.4 | |||||||
| NCBI | gene | 182255 | |||||||
| RefSeq | protein | NM_001373219.3 | |||||||
| TrEMBL | UniProtAcc | Q9GYK3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GYK3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00026867 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00081686 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| CSP26.g16075 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP31.g18921 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP38.g6055 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| Cni-C05D9.4 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00339.g9707 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_03131 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_022280 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g18384 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including AIZ; NSM; accessory cell; arc ant V; and mechanosensory neurons based on tiling array; single-cell RNA-seq; and RNA-seq studies. Is affected by several genes including daf-16; daf-12; and rrf-3 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including Zidovudine; Rifampin; and Sirolimus based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D9.4 | |||||||
| Corresponding_CDS_history | C05D9.4:wp225 | ||||||||
| C05D9.4:wp271 | |||||||||
| Corresponding_transcript | C05D9.4.1 | ||||||||
| Associated_feature | WBsf647818 | ||||||||
| WBsf1003942 | |||||||||
| WBsf1003943 | |||||||||
| WBsf1003944 | |||||||||
| WBsf1022215 | |||||||||
| WBsf1022216 | |||||||||
| WBsf235310 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039763 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010214 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021926 | ||||||||
| Expr1143850 | |||||||||
| Expr2000474 | |||||||||
| Expr2018697 | |||||||||
| Microarray_results | SMD_C05D9.4 | ||||||||
| Aff_C05D9.4 | |||||||||
| GPL14144_C05D9.4_71-130_0.678_9_A | |||||||||
| GPL19516_CGZ0002633 | |||||||||
| GPL21109_C05D9.4 | |||||||||
| GPL8304_CE_WBGene00015473_B | |||||||||
| GPL8673_C05D9_4P00003 | |||||||||
| Expression_cluster (63) | |||||||||
| Interaction | WBInteraction000161236 | ||||||||
| WBInteraction000182375 | |||||||||
| WBInteraction000191379 | |||||||||
| WBInteraction000193949 | |||||||||
| WBInteraction000223252 | |||||||||
| WBInteraction000236702 | |||||||||
| WBInteraction000244389 | |||||||||
| WBInteraction000420244 | |||||||||
| WBInteraction000434071 | |||||||||
| WBInteraction000439071 | |||||||||
| Map_info | Positive | Positive_clone | C05D9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -18.5841 | |||||||
| Method | Gene |
