WormBase Tree Display for Gene: WBGene00015497
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WBGene00015497 | Evidence | Paper_evidence | WBPaper00003754 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_IV | ||||
Identity | Version | 2 | |||||
Name | CGC_name | nhr-76 | Person_evidence | WBPerson573 | |||
Sequence_name | C05G6.1 | ||||||
Molecular_name | C05G6.1 | ||||||
C05G6.1.1 | |||||||
CE37476 | |||||||
Other_name | CELE_C05G6.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | nhr-76 | ||||||
DB_info | Database | AceView | gene | 4B385 | |||
WormQTL | gene | WBGene00015497 | |||||
WormFlux | gene | WBGene00015497 | |||||
NDB | locus_tag | CELE_C05G6.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00015497|UniProtKB=Q65CM0 | |||||
family | PTHR24083 | ||||||
NCBI | gene | 182276 | |||||
RefSeq | protein | NM_067560.6 | |||||
SwissProt | UniProtAcc | Q65CM0 | |||||
TREEFAM | TREEFAM_ID | TF317760 | |||||
UniProt_GCRP | UniProtAcc | Q65CM0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00003666 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Laboratory | PY | ||||||
Allele (158) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (20) | |||||||
Ortholog (34) | |||||||
Paralog (250) | |||||||
Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway; positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory gland cell; intestine; pharynx; and vulval muscle. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C05G6.1 | |||||
Corresponding_CDS_history | C05G6.1:wp102 | ||||||
C05G6.1:wp131 | |||||||
Corresponding_transcript | C05G6.1.1 | ||||||
Other_sequence | GO250325.1 | ||||||
CJC14094_1 | |||||||
Associated_feature (15) | |||||||
Gene_product_binds (288) | |||||||
Transcription_factor | WBTranscriptionFactor000610 | ||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1183 | ||||||
Expr11341 | |||||||
Expr1015484 | |||||||
Expr1036630 | |||||||
Expr1143885 | |||||||
Expr1200056 | |||||||
Expr2014227 | |||||||
Expr2032468 | |||||||
Drives_construct | WBCnstr00010135 | ||||||
WBCnstr00018784 | |||||||
WBCnstr00028801 | |||||||
Construct_product | WBCnstr00010135 | ||||||
WBCnstr00016707 | |||||||
WBCnstr00028801 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (134) | |||||||
Interaction (36) | |||||||
Map_info | Map | IV | Position | -23.7312 | Error | 0.06052 | |
Positive | Positive_clone | C05G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4589 | |||||
5641 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
WBPaper00028802 | |||||||
WBPaper00044293 | |||||||
WBPaper00051774 | |||||||
WBPaper00061738 | |||||||
WBPaper00062388 | |||||||
WBPaper00064415 | |||||||
WBPaper00064719 | |||||||
WBPaper00065847 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |