WormBase Tree Display for Gene: WBGene00015598
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| WBGene00015598 | SMap | S_parent | Sequence | C08E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-163 | Person_evidence | WBPerson655 | |||||
| Sequence_name | C08E3.6 | ||||||||
| Molecular_name | C08E3.6 | ||||||||
| C08E3.6.1 | |||||||||
| CE08009 | |||||||||
| Other_name | CELE_C08E3.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | fbxa-163 | ||||||||
| DB_info | Database | AceView | gene | 2B902 | |||||
| WormQTL | gene | WBGene00015598 | |||||||
| WormFlux | gene | WBGene00015598 | |||||||
| NDB | locus_tag | CELE_C08E3.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015598|UniProtKB=O17196 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 182398 | |||||||
| RefSeq | protein | NM_061609.3 | |||||||
| TREEFAM | TREEFAM_ID | TF321294 | |||||||
| TrEMBL | UniProtAcc | O17196 | |||||||
| UniProt_GCRP | UniProtAcc | O17196 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-163 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (88) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (22) | |||||||||
| Paralog (223) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in body wall muscle cell; intestine; and neurons based on tiling array studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-three chemicals including methylmercuric chloride; rotenone; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C08E3.6 | |||||||
| Corresponding_transcript | C08E3.6.1 | ||||||||
| Associated_feature | WBsf222704 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00010450 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028672 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070143 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040095 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1144164 | ||||||||
| Expr2011491 | |||||||||
| Expr2029728 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (209) | |||||||||
| Interaction | WBInteraction000165063 | ||||||||
| WBInteraction000178952 | |||||||||
| WBInteraction000228615 | |||||||||
| WBInteraction000291320 | |||||||||
| WBInteraction000303364 | |||||||||
| WBInteraction000389162 | |||||||||
| WBInteraction000410303 | |||||||||
| Map_info | Map | II | Position | -15.3169 | Error | 0.004407 | |||
| Positive | Positive_clone | C08E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00035429 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
