WormBase Tree Display for Gene: WBGene00015788
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| WBGene00015788 | SMap | S_parent | Sequence | C15B12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C15B12.8 | |||||||
| Molecular_name | C15B12.8 | ||||||||
| C15B12.8.1 | |||||||||
| CE39320 | |||||||||
| Other_name | SOX | Paper_evidence | WBPaper00046400 | ||||||
| CELE_C15B12.8 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | C15B12.8 | ||||||||
| DB_info | Database | AceView | gene | XH95 | |||||
| WormQTL | gene | WBGene00015788 | |||||||
| WormFlux | gene | WBGene00015788 | |||||||
| NDB | locus_tag | CELE_C15B12.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015788|UniProtKB=Q8WSW2 | |||||||
| family | PTHR10961 | ||||||||
| NCBI | gene | 259861 | |||||||
| RefSeq | protein | NM_171706.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313837 | |||||||
| TrEMBL | UniProtAcc | Q8WSW2 | |||||||
| UniProt_GCRP | UniProtAcc | Q8WSW2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (56) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00085346 | ||||||||
| 00085347 | |||||||||
| 00085348 | |||||||||
| 00085349 | |||||||||
| 00121568 | |||||||||
| 00121569 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00015783 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable L-pipecolate oxidase activity and sarcosine oxidase activity. Predicted to be involved in L-lysine catabolic process to acetyl-CoA via L-pipecolate. Predicted to be located in peroxisome. Is an ortholog of human PIPOX (pipecolic acid and sarcosine oxidase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15B12.8 | |||||||
| Corresponding_CDS_history | C15B12.8:wp151 | ||||||||
| Corresponding_transcript | C15B12.8.1 | ||||||||
| Other_sequence | CBC06855_1 | ||||||||
| Oden_isotig21183 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040589 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1015589 | ||||||||
| Expr1144643 | |||||||||
| Expr2000806 | |||||||||
| Expr2019024 | |||||||||
| Drives_construct | WBCnstr00028568 | ||||||||
| Construct_product | WBCnstr00028568 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction | WBInteraction000285609 | ||||||||
| WBInteraction000317465 | |||||||||
| Map_info | Positive | Positive_clone | C15B12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -2.8944 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046400 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Method | Gene |
