WormBase Tree Display for Gene: WBGene00015862

WBGene00015862 SMap: S_parent: Sequence: C16D9
  Identity: Version: 3
    Name: CGC_name: srt-25 Person_evidence: WBPerson655
      Sequence_name: C16D9.7
      Molecular_name: C16D9.7
      Other_name: CELE_C16D9.7 Accession_evidence: NDB BX284605
      Public_name: srt-25
    DB_info: Database: AceView gene 5I734
        WormQTL gene WBGene00015862
        WormFlux gene WBGene00015862
        NDB locus_tag CELE_C16D9.7
        NCBI gene 182688
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Dec 2004 09:41:19 WBPerson2970 Name_change: CGC_name: srt-25
        3 21 Sep 2017 13:55:20 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: srt
    Allele (16)
    RNASeq_FPKM (74)
    Ortholog: WBGene00032444 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00053041 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00143391 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00096624 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00114673 Pristionchus pacificus From_analysis: Inparanoid_8
    Paralog (69)
    Structured_description: Automated_description: Enriched in neurons and rectal gland cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including clk-1; hpl-2; and dpy-21 based on tiling array; microarray; and RNA-seq studies. Is affected by resveratrol based on microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: C16D9.7:wp106
      C16D9.7:wp137
      C16D9.7:wp227
      C16D9.7:wp234
      C16D9.7:wp261
    Corresponding_pseudogene: C16D9.7
    Associated_feature: WBsf1000609
      WBsf1000610
      WBsf1019998
      WBsf1019999
  Experimental_info: Expr_pattern: Expr1012170
      Expr1144782
      Expr2016659
      Expr2034848
    Drives_construct: WBCnstr00028505
    Construct_product: WBCnstr00028505
    Microarray_results: SMD_C16D9.7
      180235_at
      Aff_C16D9.7
      GPL13394_WBGene00015862
      GPL13914_C16D9.7
      GPL14144_C16D9.7_478-537_0.942_2_A
      GPL19516_CGZ0004959
      GPL21109_C16D9.7
      GPL8304_CE_WBGene00015862_A
      GPL8673_C16D9_7P00121
    Expression_cluster (26)
    Interaction (46)
  Map_info: Map: V Position: 1.25453 Error: 0.002803
    Positive: Positive_clone: C16D9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene