WormBase Tree Display for Gene: WBGene00015934
expand all nodes | collapse all nodes | view schema
| WBGene00015934 | SMap | S_parent | Sequence | C17H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-48 | Person_evidence | WBPerson83 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | C17H12.9 | ||||||||
| Molecular_name | C17H12.9 | ||||||||
| C17H12.9.1 | |||||||||
| CE16869 | |||||||||
| Other_name | CELE_C17H12.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ceh-48 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ceh-48 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00001387 | ||||||||
| WBStrain00001488 | |||||||||
| WBStrain00031995 | |||||||||
| WBStrain00051839 | |||||||||
| WBStrain00055165 | |||||||||
| WBStrain00055018 | |||||||||
| WBStrain00055004 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00000444 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000459 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000460 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017538 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-48 encodes a ONECUT class CUT homeobox protein with a single N-terminal cut domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; CEH-48 is strongly affiliated with, and may be orthologous to, Drosophila ONECUT and mammalian HNF6 proteins; ceh-48 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00005164 | |||||
| WBPaper00005654 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson13481 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head; neurons; spermathecal-uterine junction; ventral nerve cord; and vulva. Is an ortholog of human ONECUT1 (one cut homeobox 1); ONECUT2 (one cut homeobox 2); and ONECUT3 (one cut homeobox 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C17H12.9 | |||||||
| Corresponding_transcript | C17H12.9.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf978680 | ||||||||
| WBsf228464 | |||||||||
| WBsf228465 | |||||||||
| WBsf228466 | |||||||||
| WBsf228467 | |||||||||
| Transcription_factor | WBTranscriptionFactor000050 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029040 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010951 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040871 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00002278 | ||||||||
| WBCnstr00004286 | |||||||||
| WBCnstr00011042 | |||||||||
| WBCnstr00012581 | |||||||||
| WBCnstr00028443 | |||||||||
| Construct_product | WBCnstr00022546 | ||||||||
| WBCnstr00028443 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (203) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | IV | Position | 3.23912 | Error | 0.000916 | |||
| Positive | Positive_clone | C17H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5424 | |||||||
| 4478 | |||||||||
| 4752 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
