WormBase Tree Display for Gene: WBGene00016104
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| WBGene00016104 | SMap | S_parent | Sequence | C25F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddr-1 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | C25F6.4 | ||||||||
| Molecular_name | C25F6.4 | ||||||||
| C25F6.4.1 | |||||||||
| CE45027 | |||||||||
| Other_name | CELE_C25F6.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ddr-1 | ||||||||
| DB_info | Database | AceView | gene | XG83 | |||||
| WormQTL | gene | WBGene00016104 | |||||||
| WormFlux | gene | WBGene00016104 | |||||||
| NDB | locus_tag | CELE_C25F6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016104|UniProtKB=Q18163 | |||||||
| family | PTHR24416 | ||||||||
| NCBI | gene | 180817 | |||||||
| RefSeq | protein | NM_076525.5 | |||||||
| SwissProt | UniProtAcc | Q18163 | |||||||
| TREEFAM | TREEFAM_ID | TF317840 | |||||||
| UniProt_GCRP | UniProtAcc | Q18163 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Mar 2007 13:57:19 | WBPerson2970 | Name_change | CGC_name | ddr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddr | ||||||||
| Allele (96) | |||||||||
| Strain | WBStrain00031680 | ||||||||
| WBStrain00032287 | |||||||||
| WBStrain00050781 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (49) | |||||||||
| Structured_description | Concise_description | The C25F6.4 gene encodes a protein tyrosine kinase homolog that is also homologous to human RS1. | Paper_evidence | WBPaper00004103 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Involved in motor neuron axon guidance and positive regulation of axon regeneration. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Expressed in hypodermis; intestinal muscle; nervous system; and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C25F6.4 | |||||||
| Corresponding_transcript | C25F6.4.1 | ||||||||
| Other_sequence | JI166967.1 | ||||||||
| EX502596.1 | |||||||||
| JI167122.1 | |||||||||
| FF679321.1 | |||||||||
| TSC07344_1 | |||||||||
| Dviv_isotig25700 | |||||||||
| FF679508.1 | |||||||||
| HBC00086_1 | |||||||||
| Hbac_isotig03017 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091029 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011168 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041195 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10585 | ||||||||
| Expr1026954 | |||||||||
| Expr1036878 | |||||||||
| Expr1145226 | |||||||||
| Expr2010832 | |||||||||
| Expr2029070 | |||||||||
| Drives_construct | WBCnstr00017013 | ||||||||
| WBCnstr00028323 | |||||||||
| Construct_product | WBCnstr00028323 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction | WBInteraction000150619 | ||||||||
| WBInteraction000301564 | |||||||||
| WBInteraction000322331 | |||||||||
| WBInteraction000356149 | |||||||||
| WBInteraction000368745 | |||||||||
| WBInteraction000573249 | |||||||||
| WBInteraction000573250 | |||||||||
| Map_info | Map | X | Position | -5.28873 | Error | 0.016993 | |||
| Positive | Positive_clone | C25F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
