WormBase Tree Display for Gene: WBGene00016172
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WBGene00016172 | SMap | S_parent | Sequence | C27H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | C27H5.2 | |||||||
Molecular_name (12) | |||||||||
Other_name | CELE_C27H5.2 | Accession_evidence | NDB | BX284602 | |||||
Public_name | C27H5.2 | ||||||||
DB_info | Database | AceView | gene | 2H449 | |||||
WormQTL | gene | WBGene00016172 | |||||||
WormFlux | gene | WBGene00016172 | |||||||
NDB | locus_tag | CELE_C27H5.2 | |||||||
NCBI | gene | 174176 | |||||||
RefSeq | protein | NM_063083.5 | |||||||
NM_063084.6 | |||||||||
NM_182242.4 | |||||||||
NM_182243.5 | |||||||||
TREEFAM | TREEFAM_ID | TF343480 | |||||||
TrEMBL | UniProtAcc | H2KZ24 | |||||||
H2KZ25 | |||||||||
Q8IG43 | |||||||||
H2KZ26 | |||||||||
UniProt_GCRP | UniProtAcc | H2KZ24 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (74) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022032 | ||||||||
Ortholog (27) | |||||||||
Paralog | WBGene00001086 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00001860 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00003367 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004873 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004874 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00010306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019087 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00044079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C27H5.2a | |||||||
C27H5.2b | |||||||||
C27H5.2c | |||||||||
C27H5.2d | |||||||||
Corresponding_transcript | C27H5.2a.1 | ||||||||
C27H5.2b.1 | |||||||||
C27H5.2c.1 | |||||||||
C27H5.2d.1 | |||||||||
Other_sequence (38) | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00082911 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011274 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041373 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001173 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020386 | ||||||||
Expr1036923 | |||||||||
Expr1145407 | |||||||||
Expr2001185 | |||||||||
Expr2019407 | |||||||||
Drives_construct | WBCnstr00028274 | ||||||||
Construct_product | WBCnstr00028274 | ||||||||
Microarray_results (41) | |||||||||
Expression_cluster (163) | |||||||||
SAGE_tag | SAGE:tgcaaatctt | Strand | Antisense | ||||||
SAGE:ttgatgatga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaatgatcga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:caagaaatca | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ttgatgatgaactcgct | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaatgatcgagaatact | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
Interaction (26) | |||||||||
Map_info | Positive | Positive_clone | C27H5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | II | 0.496185 | |||||||
Reference | WBPaper00035598 | ||||||||
WBPaper00058717 | |||||||||
Method | Gene |