WormBase Tree Display for Gene: WBGene00016522

WBGene00016522 SMap: S_parent: Sequence: C39B5
  Identity: Version: 2
    Name: CGC_name: fbxa-38 Person_evidence: WBPerson655
      Sequence_name: C39B5.4
      Molecular_name: C39B5.4
        C39B5.4.1
        CE23580
      Other_name: CELE_C39B5.4 Accession_evidence: NDB BX284603
      Public_name: fbxa-38
    DB_info: Database: AceView gene 3D315
        WormQTL gene WBGene00016522
        WormFlux gene WBGene00016522
        NDB locus_tag CELE_C39B5.4
        Panther gene CAEEL|WormBase=WBGene00016522|UniProtKB=Q9N5X0
          family PTHR23015
        NCBI gene 183323
        RefSeq protein NM_065114.6
        TREEFAM TREEFAM_ID TF322360
        TrEMBL UniProtAcc Q9N5X0
        UniProt_GCRP UniProtAcc Q9N5X0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-38
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (49)
    RNASeq_FPKM (74)
    Ortholog (17)
    Paralog (222)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in ALNL; ALNR; and hypodermis based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq and microarray studies. Is affected by eight chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C39B5.4
    Corresponding_transcript: C39B5.4.1
    Other_sequence: PT03360
      MP00816
    Associated_feature: WBsf644971
      WBsf224497
  Experimental_info: RNAi_result: WBRNAi00007096 Inferred_automatically: RNAi_primary
      WBRNAi00042192 Inferred_automatically: RNAi_primary
      WBRNAi00042191 Inferred_automatically: RNAi_primary
      WBRNAi00029675 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019113
      Expr1146187
      Expr2011542
      Expr2029779
    Drives_construct: WBCnstr00028001
    Construct_product: WBCnstr00028001
    Microarray_results (14)
    Expression_cluster (79)
  Map_info: Map: III Position: -14.9086
    Positive: Positive_clone: C39B5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene