WormBase Tree Display for Gene: WBGene00016735
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| WBGene00016735 | SMap | S_parent | Sequence | C46H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fhod-1 | Person_evidence | WBPerson399 | |||||
| WBPerson3066 | |||||||||
| Sequence_name | C46H11.11 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | C46H11.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C46H11.11 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | fhod-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00016735 | |||||
| WormFlux | gene | WBGene00016735 | |||||||
| NDB | locus_tag | CELE_C46H11.11 | |||||||
| Panther | gene | CAEEL|WormBase=C46H11.11e|UniProtKB=A0A0K3AU72 | |||||||
| family | PTHR45920 | ||||||||
| NCBI | gene | 172133 | |||||||
| RefSeq | protein | NM_059112.4 | |||||||
| NM_001313490.3 | |||||||||
| NM_001313489.3 | |||||||||
| NM_001313486.4 | |||||||||
| NM_001313484.2 | |||||||||
| NM_001313488.4 | |||||||||
| NM_001313487.3 | |||||||||
| NM_001313485.3 | |||||||||
| TrEMBL | UniProtAcc | G5EFZ9 | |||||||
| A0A0K3AR77 | |||||||||
| A0A0K3AQN9 | |||||||||
| A0A0K3AWK6 | |||||||||
| A0A0K3AR72 | |||||||||
| A0A0K3ATM4 | |||||||||
| A0A0K3ATM7 | |||||||||
| A0A0K3AU72 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AU72 | |||||||
| OMIM | gene | 609691 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Mar 2005 10:23:45 | WBPerson2970 | Name_change | CGC_name | fhod-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fhod | ||||||||
| Allele (125) | |||||||||
| Strain | WBStrain00003122 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000582 | ||||||||
| 00000583 | |||||||||
| 00000584 | |||||||||
| 00000585 | |||||||||
| 00001214 | |||||||||
| 00001215 | |||||||||
| 00001216 | |||||||||
| 00001217 | |||||||||
| Contained_in_operon | CEOP1899 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00000872 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00008848 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018976 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019030 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021698 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable actin filament binding activity. Involved in actin filament organization and embryonic body morphogenesis. Located in actin cytoskeleton. Expressed in muscle cell; pharyngeal muscle cell; and seam cell. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy. Is an ortholog of human FHOD1 (formin homology 2 domain containing 1) and FHOD3 (formin homology 2 domain containing 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080326 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26178) | ||||
| Molecular_info | Corresponding_CDS | C46H11.11a | |||||||
| C46H11.11b | |||||||||
| C46H11.11c | |||||||||
| C46H11.11d | |||||||||
| C46H11.11e | |||||||||
| C46H11.11f | |||||||||
| C46H11.11g | |||||||||
| C46H11.11h | |||||||||
| Corresponding_CDS_history | C46H11.11a:wp178 | ||||||||
| C46H11.11b:wp178 | |||||||||
| Corresponding_transcript | C46H11.11a.1 | ||||||||
| C46H11.11b.1 | |||||||||
| C46H11.11c.1 | |||||||||
| C46H11.11d.1 | |||||||||
| C46H11.11e.1 | |||||||||
| C46H11.11f.1 | |||||||||
| C46H11.11g.1 | |||||||||
| C46H11.11h.1 | |||||||||
| Other_sequence (53) | |||||||||
| Associated_feature (28) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00117058 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111040 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022306 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111039 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029884 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042624 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003605 | ||||||||
| WBCnstr00014784 | |||||||||
| WBCnstr00027843 | |||||||||
| Construct_product | WBCnstr00014784 | ||||||||
| WBCnstr00027843 | |||||||||
| Regulate_expr_cluster | WBPaper00060634:fhod-1(tm2363)_downregulated | ||||||||
| WBPaper00060634:fhod-1(tm2363)_upregulated | |||||||||
| Antibody | WBAntibody00002372 | ||||||||
| WBAntibody00002509 | |||||||||
| WBAntibody00002510 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (191) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | I | Position | -0.421363 | Error | 0.000374 | |||
| Positive | Positive_clone | C46H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
