WormBase Tree Display for Gene: WBGene00016796
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| WBGene00016796 | SMap | S_parent | Sequence | C50A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cec-2 | Person_evidence | WBPerson437 | |||||
| Sequence_name | C50A2.2 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_C50A2.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cec-2 | ||||||||
| DB_info | Database | AceView | gene | 4B929 | |||||
| WormQTL | gene | WBGene00016796 | |||||||
| WormFlux | gene | WBGene00016796 | |||||||
| NDB | locus_tag | CELE_C50A2.2 | |||||||
| NCBI | gene | 176934 | |||||||
| RefSeq | protein | NM_001307604.3 | |||||||
| NM_001307602.3 | |||||||||
| NM_001307605.3 | |||||||||
| NM_001307603.3 | |||||||||
| NM_067646.7 | |||||||||
| TrEMBL | UniProtAcc | O44139 | |||||||
| U4PMK7 | |||||||||
| U4PC61 | |||||||||
| U4PBT4 | |||||||||
| U4PF13 | |||||||||
| UniProt_GCRP | UniProtAcc | O44139 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | cec-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cec | ||||||||
| Allele (179) | |||||||||
| Strain | WBStrain00032624 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrIV_pilon.g9633 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Enriched in several structures, including AFD; amphid sheath cell; germ line; male distal tip cell; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Chromo-like domain superfamily; Chromo/chromo shadow domain; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50A2.2a | |||||||
| C50A2.2b | |||||||||
| C50A2.2c | |||||||||
| C50A2.2d | |||||||||
| C50A2.2e | |||||||||
| Corresponding_CDS_history | C50A2.2:wp102 | ||||||||
| Corresponding_transcript | C50A2.2a.1 | ||||||||
| C50A2.2b.1 | |||||||||
| C50A2.2c.1 | |||||||||
| C50A2.2d.1 | |||||||||
| C50A2.2e.1 | |||||||||
| Associated_feature | WBsf659912 | ||||||||
| WBsf976985 | |||||||||
| WBsf976986 | |||||||||
| WBsf976987 | |||||||||
| WBsf976988 | |||||||||
| WBsf976989 | |||||||||
| WBsf227918 | |||||||||
| WBsf227919 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00008539 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030004 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042843 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024874 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113466 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028930 | ||||||||
| Expr1037210 | |||||||||
| Expr1146821 | |||||||||
| Expr2009833 | |||||||||
| Expr2028073 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | IV | Position | -21.4895 | Error | 0.064042 | |||
| Positive | Positive_clone | C50A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00065308 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
