WormBase Tree Display for Gene: WBGene00016912
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WBGene00016912 | SMap | S_parent | Sequence | C54D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | clec-86 | Person_evidence | WBPerson261 | |||||
WBPerson655 | |||||||||
Sequence_name | C54D1.2 | ||||||||
Molecular_name | C54D1.2 | ||||||||
C54D1.2.1 | |||||||||
CE06978 | |||||||||
Other_name | CELE_C54D1.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | clec-86 | ||||||||
DB_info | Database | AceView | gene | XH759 | |||||
WormQTL | gene | WBGene00016912 | |||||||
WormFlux | gene | WBGene00016912 | |||||||
NDB | locus_tag | CELE_C54D1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016912|UniProtKB=Q18821 | |||||||
family | PTHR22802 | ||||||||
NCBI | gene | 183775 | |||||||
RefSeq | protein | NM_076801.2 | |||||||
TREEFAM | TREEFAM_ID | TF317914 | |||||||
TrEMBL | UniProtAcc | Q18821 | |||||||
UniProt_GCRP | UniProtAcc | Q18821 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-86 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clec | ||||||||
Allele (12) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00062464 | ||||||||
00062465 | |||||||||
00062466 | |||||||||
Ortholog (24) | |||||||||
Paralog (25) | |||||||||
Structured_description | Automated_description | Predicted to enable carbohydrate binding activity. Involved in innate immune response. Predicted to be located in external side of plasma membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; autoimmune disease (multiple); and cholangiocarcinoma. Is an ortholog of human REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3G (regenerating family member 3 gamma). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9951) | ||||
DOID:9744 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9951) | ||||||
DOID:4947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9951) | ||||||
DOID:12894 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9951) | ||||||
Molecular_info | Corresponding_CDS | C54D1.2 | |||||||
Corresponding_transcript | C54D1.2.1 | ||||||||
Other_sequence | CBC03154_1 | ||||||||
Associated_feature | WBsf648279 | ||||||||
WBsf235901 | |||||||||
Experimental_info | RNAi_result (5) | ||||||||
Expr_pattern | Expr1010355 | ||||||||
Expr1037257 | |||||||||
Expr1147096 | |||||||||
Expr2010217 | |||||||||
Expr2028458 | |||||||||
Drives_construct | WBCnstr00027710 | ||||||||
Construct_product | WBCnstr00027710 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (249) | |||||||||
Interaction | WBInteraction000031645 | ||||||||
WBInteraction000234585 | |||||||||
Map_info | Map | X | Position | -1.82766 | |||||
Positive | Positive_clone | C54D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027722 | ||||||||
WBPaper00031686 | |||||||||
WBPaper00033987 | |||||||||
WBPaper00037524 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065681 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |