WormBase Tree Display for Gene: WBGene00017176
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| WBGene00017176 | SMap | S_parent | Sequence | F02E8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nmur-3 | Person_evidence | WBPerson11 | |||||
| Sequence_name | F02E8.2 | ||||||||
| Molecular_name | F02E8.2a | ||||||||
| F02E8.2a.1 | |||||||||
| CE33990 | |||||||||
| F02E8.2b | |||||||||
| CE07017 | |||||||||
| F02E8.2b.1 | |||||||||
| Other_name | CELE_F02E8.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nmur-3 | ||||||||
| DB_info | Database | AceView | gene | XF87 | |||||
| WormQTL | gene | WBGene00017176 | |||||||
| WormFlux | gene | WBGene00017176 | |||||||
| NDB | locus_tag | CELE_F02E8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017176|UniProtKB=Q19125 | |||||||
| family | PTHR24240 | ||||||||
| NCBI | gene | 184090 | |||||||
| RefSeq | protein | NM_001029354.5 | |||||||
| NM_001029353.5 | |||||||||
| TrEMBL | UniProtAcc | Q7JNX1 | |||||||
| Q19125 | |||||||||
| UniProt_GCRP | UniProtAcc | Q19125 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | nmur-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nmur | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00037002 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog | WBGene00034953 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00051830 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00159304 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00120137 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| FL83_00666 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g18922 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00263990 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00263992 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00005641 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007006 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019012 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F02E8.2a | |||||||
| F02E8.2b | |||||||||
| Corresponding_CDS_history | F02E8.2:wp99 | ||||||||
| Corresponding_transcript | F02E8.2a.1 | ||||||||
| F02E8.2b.1 | |||||||||
| Other_sequence | EX551354.1 | ||||||||
| EX552104.1 | |||||||||
| ACC15968_1 | |||||||||
| MH01757 | |||||||||
| EX564788.1 | |||||||||
| Associated_feature | WBsf235580 | ||||||||
| WBsf235581 | |||||||||
| WBsf235582 | |||||||||
| WBsf235583 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043819 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072206 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012783 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013378 | ||||||||
| Expr1037384 | |||||||||
| Expr1147795 | |||||||||
| Expr2014339 | |||||||||
| Expr2032580 | |||||||||
| Drives_construct | WBCnstr00027507 | ||||||||
| Construct_product | WBCnstr00027507 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (61) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | X | Position | -7.57024 | Error | 0.011728 | |||
| Positive | Positive_clone | F02E8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00038938 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061401 | |||||||||
| WBPaper00063826 | |||||||||
| WBPaper00065757 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
