WormBase Tree Display for Gene: WBGene00017205
expand all nodes | collapse all nodes | view schema
| WBGene00017205 | SMap | S_parent | Sequence | F07C4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | cest-29 | Person_evidence | WBPerson36909 | ||||||
| WBPerson7188 | ||||||||||
| Sequence_name | F07C4.12 | |||||||||
| Molecular_name | F07C4.12 | |||||||||
| Other_name | CELE_F07C4.12 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | cest-29 | |||||||||
| DB_info | Database | AceView | gene | 5I128 | ||||||
| WormQTL | gene | WBGene00017205 | ||||||||
| WormFlux | gene | WBGene00017205 | ||||||||
| NDB | locus_tag | CELE_F07C4.12 | ||||||||
| NCBI | gene | 179147 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | cest-29 | |||||
| 3 | 20 May 2019 14:55:01 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | cest | |||||||||
| Allele (114) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00038223 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00031755 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| OMA | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00038283 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00038280 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00159181 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00056846 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00194057 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00211755 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00124848 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Paralog (12) | ||||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpppppa; ABalppppppp; ABplaapapa; ABplpaaaaa; and amphid neurons based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including daf-16; hsf-1; and rrf-3 based on microarray and RNA-seq studies. Is affected by eight chemicals including Tunicamycin; stavudine; and paraquat based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F07C4.12:wp90 | ||||||||
| F07C4.12:wp145 | ||||||||||
| F07C4.12:wp271 | ||||||||||
| F07C4.12a:wp147 | ||||||||||
| F07C4.12a:wp271 | ||||||||||
| Corresponding_pseudogene | F07C4.12 | |||||||||
| Other_sequence | JI174750.1 | |||||||||
| CJC00676_1 | ||||||||||
| CBC01611_1 | ||||||||||
| JI168970.1 | ||||||||||
| CSC01629_1 | ||||||||||
| CBC06844_1 | ||||||||||
| CJC06145_1 | ||||||||||
| CJC00104_1 | ||||||||||
| FD515770.1 | ||||||||||
| Experimental_info | Expr_pattern | Expr1022043 | ||||||||
| Expr1147861 | ||||||||||
| Expr2002248 | ||||||||||
| Expr2020468 | ||||||||||
| Microarray_results (25) | ||||||||||
| Expression_cluster (110) | ||||||||||
| Interaction (18) | ||||||||||
| Map_info | Positive | Positive_clone | F07C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | V | 0.824387 | ||||||||
| Method | Gene |
