WormBase Tree Display for Gene: WBGene00017778
expand all nodes | collapse all nodes | view schema
| WBGene00017778 | SMap | S_parent | Sequence | F25B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nono-1 | Person_evidence | WBPerson71 | |||||
| Sequence_name | F25B5.7 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | psf-1 | Person_evidence | WBPerson71 | ||||||
| CELE_F25B5.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | nono-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Jan 2008 15:11:50 | WBPerson2970 | Name_change | CGC_name | psf-1 | ||||
| 3 | 10 Jul 2013 14:19:08 | WBPerson2970 | Name_change | CGC_name | nono-1 | ||||
| Other_name | psf-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nono | ||||||||
| Allele (151) | |||||||||
| Strain | WBStrain00001597 | ||||||||
| WBStrain00036755 | |||||||||
| WBStrain00050861 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005952 | ||||||||
| 00005953 | |||||||||
| 00005954 | |||||||||
| 00005955 | |||||||||
| 00005956 | |||||||||
| 00005957 | |||||||||
| 00083993 | |||||||||
| 00123109 | |||||||||
| 00123110 | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00007016 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008549 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017929 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021901 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | nono-1 encodes an ortholog of Drosophila NONA and of human NONO (OMIM:300084) and SFPQ (OMIM: 605199); fly NONA and human NONO are putative DNA- or RNA-binding proteins required for normal rhythmic behaviors; fly NONA is also required for embryonic development and visual behavior, and forms a complex with the mRNA export factor NXF1. | Paper_evidence | WBPaper00028835 | |||||
| WBPaper00028838 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 06 Nov 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); multiple myeloma; and syndromic X-linked intellectual disability 34. Is an ortholog of human PSPC1 (paraspeckle component 1) and SFPQ (splicing factor proline and glutamine rich). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080685 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||
| DOID:0060817 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||||
| DOID:0050700 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||||
| DOID:9538 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||||
| DOID:1059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||||
| DOID:1936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7871) | ||||||
| Molecular_info | Corresponding_CDS | F25B5.7a | |||||||
| F25B5.7b | |||||||||
| F25B5.7c | |||||||||
| F25B5.7d | |||||||||
| Corresponding_CDS_history | F25B5.7a:wp191 | ||||||||
| F25B5.7c:wp191 | |||||||||
| Corresponding_transcript | F25B5.7a.1 | ||||||||
| F25B5.7b.1 | |||||||||
| F25B5.7c.1 | |||||||||
| F25B5.7d.1 | |||||||||
| Other_sequence (46) | |||||||||
| Associated_feature | WBsf651091 | ||||||||
| WBsf651092 | |||||||||
| WBsf666942 | |||||||||
| WBsf992586 | |||||||||
| WBsf226744 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00081958 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031359 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073050 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045480 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073049 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005360 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073048 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1155 | ||||||||
| Expr5852 | |||||||||
| Expr9482 | |||||||||
| Expr1028359 | |||||||||
| Expr1037641 | |||||||||
| Expr1149398 | |||||||||
| Expr2014354 | |||||||||
| Expr2032595 | |||||||||
| Drives_construct | WBCnstr00002436 | ||||||||
| WBCnstr00027025 | |||||||||
| Construct_product | WBCnstr00014047 | ||||||||
| WBCnstr00027025 | |||||||||
| Microarray_results (47) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | III | Position | -1.42973 | Error | 0.000405 | |||
| Positive | Positive_clone | F25B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032289 | ||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00048643 | |||||||||
| WBPaper00052231 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
