WormBase Tree Display for Gene: WBGene00017951
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| WBGene00017951 | SMap | S_parent | Sequence | F31E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | panl-2 | Person_evidence | WBPerson150 | |||||
| Sequence_name | F31E3.4 | ||||||||
| Molecular_name | F31E3.4 | ||||||||
| F31E3.4.1 | |||||||||
| CE01269 | |||||||||
| Other_name | CELE_F31E3.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | panl-2 | ||||||||
| DB_info | Database | AceView | gene | 3I54 | |||||
| WormQTL | gene | WBGene00017951 | |||||||
| WormFlux | gene | WBGene00017951 | |||||||
| NDB | locus_tag | CELE_F31E3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017951|UniProtKB=P53015 | |||||||
| family | PTHR15728 | ||||||||
| NCBI | gene | 175974 | |||||||
| RefSeq | protein | NM_066118.6 | |||||||
| SwissProt | UniProtAcc | P53015 | |||||||
| TREEFAM | TREEFAM_ID | TF105657 | |||||||
| UniProt_GCRP | UniProtAcc | P53015 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Nov 2011 15:06:26 | WBPerson2970 | Name_change | CGC_name | panl-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | panl | ||||||||
| Allele (59) | |||||||||
| Strain | WBStrain00003741 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047967 | ||||||||
| 00047968 | |||||||||
| 00047969 | |||||||||
| 00047970 | |||||||||
| 00047971 | |||||||||
| 00123217 | |||||||||
| Ortholog (43) | |||||||||
| Structured_description | Automated_description | Predicted to enable nucleic acid binding activity. Predicted to contribute to poly(A)-specific ribonuclease activity. Involved in reproduction. Predicted to be located in P-body. Predicted to be part of PAN complex. Is an ortholog of human PAN2 (poly(A) specific ribonuclease subunit PAN2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F31E3.4 | |||||||
| Corresponding_transcript | F31E3.4.1 | ||||||||
| Other_sequence | CBC02617_1 | ||||||||
| CBC06807_1 | |||||||||
| CRC01537_1 | |||||||||
| CBC12123_1 | |||||||||
| CR06503 | |||||||||
| Associated_feature | WBsf651154 | ||||||||
| WBsf667027 | |||||||||
| WBsf667028 | |||||||||
| WBsf667029 | |||||||||
| WBsf976197 | |||||||||
| WBsf976198 | |||||||||
| WBsf976199 | |||||||||
| WBsf226884 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014152 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046021 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005323 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008208 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5925 | ||||||||
| Expr1023704 | |||||||||
| Expr1037724 | |||||||||
| Expr1149918 | |||||||||
| Expr2014719 | |||||||||
| Expr2032953 | |||||||||
| Drives_construct | WBCnstr00004176 | ||||||||
| WBCnstr00026892 | |||||||||
| Construct_product | WBCnstr00026892 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | III | Position | -0.872727 | |||||
| Positive | Positive_clone | F31E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029208 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043886 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058452 | |||||||||
| WBPaper00058597 | |||||||||
| WBPaper00060712 | |||||||||
| WBPaper00060756 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
