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WormBase Tree Display for Gene: WBGene00018319

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Name Class

WBGene00018319SMapS_parentSequenceF41H10
IdentityVersion3
NameCGC_namehda-6Person_evidenceWBPerson260
WBPerson2136
Sequence_nameF41H10.6
Molecular_name (12)
Other_namehdac-6Paper_evidenceWBPaper00005214
Person_evidenceWBPerson2136
Y4C6B.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_F41H10.6Accession_evidenceNDBBX284604
Public_namehda-6
DB_infoDatabase (14)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
202 Nov 2009 10:01:13WBPerson9133Name_changeCGC_namehdac-6
312 Apr 2012 16:15:43WBPerson2970Name_changeCGC_namehda-6
Other_namehdac-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhda
Allele (90)
StrainWBStrain00033033
RNASeq_FPKM (74)
GO_annotation (14)
Contained_in_operonCEOP4679
CEOP4002
OrthologWBGene00064007Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00039076Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
WormBase-Compara
WBGene00161939Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154809Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129219Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00140266Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00154224Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00156432Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143843Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00135705Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00077925Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00057550Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00076124Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00084846Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00127127Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00224268Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8073Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5440Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7027Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g7029Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g7030Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16699Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6429Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6494Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21522Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3869Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9107Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g9108Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g9110Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25980Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g719Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g721Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1159Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g1160Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g1162Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00336.g9395Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00754.g13892Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13332Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13334Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold494.g2171Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01473.g21136Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11830Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_11832Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013541Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09073Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13238Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16464Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40332910Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10426Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00120701Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00240425Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00097159Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00294485Trichuris murisFrom_analysisWormBase-Compara
WBGene00295727Trichuris murisFrom_analysisWormBase-Compara
WBGene00297393Trichuris murisFrom_analysisWormBase-Compara
WBGene00298512Trichuris murisFrom_analysisWormBase-Compara
SGD:S000004966Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0026428Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3232Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
HGNC:14064Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1333752Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00001837Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001838Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009663Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00219378Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001834Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001835Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001836Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007953Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009657Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable histone deacetylase activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in several diseases, including cervix uteri carcinoma in situ; chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia; and polycystic liver disease. Is an ortholog of human HDAC6 (histone deacetylase 6).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:14330Homo sapiensPaper_evidenceWBPaper00041253
Curator_confirmedWBPerson324
Date_last_updated18 Nov 2013 00:00:00
Potential_modelDOID:8991Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14064)
DOID:4947Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14064)
DOID:0112106Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14064)
DOID:0050770Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14064)
Disease_relevanceIn elegans, alpha-synuclein (alpha-syn) toxicity, implicated in Parkinson''s disease and other synucleinopathies, is modeled by expressing it from the dopamine transporter (dat-1) gene promotor in transgenic GFP worms, resulting in an age-dependent progressive loss of dopaminergic neurons; using this system, it was seen that the knock-down of specific candidate genes in elegans, that interact with catp-6/ATP13A2, resulted in significant enhancement of alpha-syn-induced dopaminergic neurodegeneration; these catp-6/ATP13A2 interactors include the elegans ortholog of histone deacetylase 6 (hda-6), coagulation factor II (thrombin) receptor (dop-2), AP2 associated kinase 1 (AAK1; sel-5) along with neuropeptide Y receptor Y1 (npr-4), and YIP1 interacting factor homolog A (yif-1).Homo sapiensPaper_evidenceWBPaper00041253
Curator_confirmedWBPerson324
Date_last_updated19 Nov 2013 00:00:00
Models_disease_in_annotationWBDOannot00000249
Molecular_infoCorresponding_CDSF41H10.6a
F41H10.6b
F41H10.6c
F41H10.6d
Corresponding_transcriptF41H10.6a.1
F41H10.6b.1
F41H10.6c.1
F41H10.6d.1
Other_sequence (43)
Associated_featureWBsf651797
WBsf996488
WBsf230078
WBsf230079
WBsf230080
Experimental_info (8)
Map_infoMapIVPosition1.59535Error0.000683
PositivePositive_cloneF41H10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene