WormBase Tree Display for Gene: WBGene00018523
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| WBGene00018523 | SMap | S_parent | Sequence | F46H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lact-1 | Person_evidence | WBPerson168 | |||||
| Sequence_name | F46H5.8 | ||||||||
| Molecular_name | F46H5.8 | ||||||||
| F46H5.8.1 | |||||||||
| CE35542 | |||||||||
| Other_name | CELE_F46H5.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lact-1 | ||||||||
| DB_info | Database | AceView | gene | XH876 | |||||
| WormQTL | gene | WBGene00018523 | |||||||
| WormFlux | gene | WBGene00018523 | |||||||
| NDB | locus_tag | CELE_F46H5.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018523|UniProtKB=Q20489 | |||||||
| family | PTHR43319 | ||||||||
| NCBI | gene | 185882 | |||||||
| RefSeq | protein | NM_076820.3 | |||||||
| TREEFAM | TREEFAM_ID | TF315291 | |||||||
| TrEMBL | UniProtAcc | Q20489 | |||||||
| UniProt_GCRP | UniProtAcc | Q20489 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Apr 2007 16:02:30 | WBPerson2970 | Name_change | CGC_name | lact-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lact | ||||||||
| Allele (45) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00007358 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010877 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010897 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00014164 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016355 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008410 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021315 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | lact-1 encodes a beta-lactamase domain-containing protein. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 18 Dec 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including head ganglion; head mesodermal cell; muscle cell; neurons; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by fourteen chemicals including Tunicamycin; D-glucose; and juglone based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46H5.8 | |||||||
| Corresponding_CDS_history | F46H5.8:wp108 | ||||||||
| Corresponding_transcript | F46H5.8.1 | ||||||||
| Other_sequence | ACC31421_1 | ||||||||
| JO467688.1 | |||||||||
| EX828082.1 | |||||||||
| Acan_isotig08591 | |||||||||
| Oden_isotig27705 | |||||||||
| Dviv_isotig18447 | |||||||||
| JI166163.1 | |||||||||
| JI176220.1 | |||||||||
| Associated_feature | WBsf670712 | ||||||||
| WBsf670713 | |||||||||
| WBsf1005782 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032398 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015135 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047585 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017674 | ||||||||
| Expr1151422 | |||||||||
| Expr2012993 | |||||||||
| Expr2031225 | |||||||||
| Drives_construct | WBCnstr00026448 | ||||||||
| Construct_product | WBCnstr00026448 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (165) | |||||||||
| Interaction | WBInteraction000208097 | ||||||||
| WBInteraction000214016 | |||||||||
| WBInteraction000231626 | |||||||||
| WBInteraction000254563 | |||||||||
| WBInteraction000360266 | |||||||||
| WBInteraction000576309 | |||||||||
| Map_info | Map | X | Position | -1.78746 | |||||
| Positive | Positive_clone | F46H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032031 | ||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
