WormBase Tree Display for Gene: WBGene00018586
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| WBGene00018586 | SMap | S_parent | Sequence | F48A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ubxn-3 | Person_evidence | WBPerson2838 | |||||
| WBPerson4369 | |||||||||
| Sequence_name | F48A11.5 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_F48A11.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ubxn-3 | ||||||||
| DB_info | Database | AceView | gene | 2A508 | |||||
| WormQTL | gene | WBGene00018586 | |||||||
| WormFlux | gene | WBGene00018586 | |||||||
| NDB | locus_tag | CELE_F48A11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018586|UniProtKB=H2L056 | |||||||
| family | PTHR23322 | ||||||||
| NCBI | gene | 173407 | |||||||
| RefSeq | protein | NM_001313618.3 | |||||||
| NM_001027010.6 | |||||||||
| NM_001383772.2 | |||||||||
| NM_001313619.3 | |||||||||
| NM_001313620.3 | |||||||||
| SwissProt | UniProtAcc | H2L056 | |||||||
| TREEFAM | TREEFAM_ID | TF314172 | |||||||
| UniProt_GCRP | UniProtAcc | H2L056 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Jan 2006 11:22:20 | WBPerson2970 | Name_change | CGC_name | ubxn-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubxn | ||||||||
| Allele (84) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Contained_in_operon | CEOP2016 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00006718 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010433 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ubxn-3 encodes one of six C. elegans UBX (ubiquitin regulatory X) domain-containing proteins. | Paper_evidence | WBPaper00029386 | |||||
| WBPaper00037734 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Apr 2011 00:00:00 | ||||||||
| Automated_description | Enables K48-linked polyubiquitin modification-dependent protein binding activity. Involved in several processes, including developmental process involved in reproduction; positive regulation of mitotic cell cycle, embryonic; and regulation of protein localization to chromatin. Located in nucleus and perinuclear region of cytoplasm. Part of chromatin. Expressed in gonad; neurons; spermatheca; and spermatocyte. Is an ortholog of human FAF1 (Fas associated factor 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48A11.5a | |||||||
| F48A11.5b | |||||||||
| F48A11.5c | |||||||||
| F48A11.5d | |||||||||
| F48A11.5e | |||||||||
| Corresponding_CDS_history | F48A11.5:wp127 | ||||||||
| F48A11.5a:wp227 | |||||||||
| Corresponding_transcript | F48A11.5a.1 | ||||||||
| F48A11.5b.1 | |||||||||
| F48A11.5c.1 | |||||||||
| F48A11.5d.1 | |||||||||
| F48A11.5e.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00078146 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032466 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106531 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015228 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047712 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4668 | ||||||||
| Expr4675 | |||||||||
| Expr11592 | |||||||||
| Expr12781 | |||||||||
| Expr1018482 | |||||||||
| Expr1037999 | |||||||||
| Expr1151546 | |||||||||
| Expr2017732 | |||||||||
| Expr2035870 | |||||||||
| Drives_construct | WBCnstr00012163 | ||||||||
| Construct_product | WBCnstr00012163 | ||||||||
| WBCnstr00022503 | |||||||||
| Antibody | WBAntibody00002588 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (140) | |||||||||
| Map_info | Map | II | Position | -15.7715 | Error | 0.021248 | |||
| Positive | Positive_clone | F48A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029386 | ||||||||
| WBPaper00037734 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049197 | |||||||||
| WBPaper00051026 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061541 | |||||||||
| WBPaper00061675 | |||||||||
| WBPaper00062035 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
