WormBase Tree Display for Gene: WBGene00018678
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| WBGene00018678 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tdpo-1 | Person_evidence | WBPerson1720 | |||||
| WBPerson195 | |||||||||
| Sequence_name | F52C12.1 | ||||||||
| Molecular_name | F52C12.1a | ||||||||
| F52C12.1a.1 | |||||||||
| CE19434 | |||||||||
| F52C12.1b | |||||||||
| CE48525 | |||||||||
| F52C12.1c | |||||||||
| CE48982 | |||||||||
| F52C12.1b.1 | |||||||||
| F52C12.1c.1 | |||||||||
| Other_name | CELE_F52C12.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tdpo-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jul 2019 11:28:17 | WBPerson1983 | Name_change | CGC_name | tdpo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tdpo | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00051054 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP4052 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to enable 3'-tyrosyl-DNA phosphodiesterase activity; double-stranded DNA binding activity; and single-stranded DNA binding activity. Predicted to be involved in DNA repair. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1 with axonal neuropathy. Is an ortholog of human TDP1 (tyrosyl-DNA phosphodiesterase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0090115 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18884) | ||||
| Molecular_info | Corresponding_CDS | F52C12.1a | |||||||
| F52C12.1b | |||||||||
| F52C12.1c | |||||||||
| Corresponding_transcript | F52C12.1a.1 | ||||||||
| F52C12.1b.1 | |||||||||
| F52C12.1c.1 | |||||||||
| Other_sequence | JI178755.1 | ||||||||
| Hbac_isotig06861 | |||||||||
| Dviv_isotig08196 | |||||||||
| Dviv_isotig08200 | |||||||||
| Dviv_isotig08199 | |||||||||
| JI169950.1 | |||||||||
| CBC07186_1 | |||||||||
| Dviv_isotig08197 | |||||||||
| CJC16761_1 | |||||||||
| Oden_isotig23331 | |||||||||
| Associated_feature | WBsf227988 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00007988 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032587 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015368 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047926 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028560 | ||||||||
| Expr1038039 | |||||||||
| Expr1151755 | |||||||||
| Expr2003975 | |||||||||
| Expr2022196 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Positive | Positive_clone | F52C12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -12.6559 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
