WormBase Tree Display for Gene: WBGene00018786
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WBGene00018786 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hmbx-1 | Person_evidence | WBPerson42 | |||||
Sequence_name | F54A5.1 | ||||||||
Molecular_name | F54A5.1 | ||||||||
F54A5.1.1 | |||||||||
CE20859 | |||||||||
Other_name | C54G6.f | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_F54A5.1 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | hmbx-1 | ||||||||
DB_info | Database | AceView | gene | 1B465 | |||||
WormQTL | gene | WBGene00018786 | |||||||
WormFlux | gene | WBGene00018786 | |||||||
NDB | locus_tag | CELE_F54A5.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018786|UniProtKB=Q9TYT0 | |||||||
family | PTHR14618 | ||||||||
NCBI | gene | 171679 | |||||||
RefSeq | protein | NM_001383445.2 | |||||||
SwissProt | UniProtAcc | Q9TYT0 | |||||||
TREEFAM | TREEFAM_ID | TF320327 | |||||||
UniProt_GCRP | UniProtAcc | Q9TYT0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 21 May 2010 15:53:40 | WBPerson2970 | Name_change | CGC_name | hmbx-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hmbx | ||||||||
Allele (58) | |||||||||
Strain | WBStrain00033179 | ||||||||
WBStrain00035003 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (36) | |||||||||
Structured_description | Concise_description | hmbx-1 is an ortholog of human HMBOX1 (homeobox containing 1); it belongs to the HNF class of homeobox genes, which encodes an HNF domain and an atypical homeodomain; hmbx-1 is predicted to have DNA binding activity, based on protein domain information; hmbx-1 is expressed in the anal depressor muscle, intestine, anal sphincter muscle, body wall musculature, vulval muscle, ventral nerve cord, and the dorsal nerve cord. | Paper_evidence | WBPaper00046864 | |||||
WBPaper00026980 | |||||||||
WBPaper00029055 | |||||||||
WBPaper00032484 | |||||||||
WBPaper00036375 | |||||||||
WBPaper00037048 | |||||||||
WBPaper00045521 | |||||||||
Person_evidence | WBPerson83 | ||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
Automated_description | Predicted to enable double-stranded telomeric DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Located in nucleus. Expressed in body wall musculature; enteric muscle; mechanosensory neurons; somatic nervous system; and vulval muscle. Is an ortholog of human HMBOX1 (homeobox containing 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54A5.1 | |||||||
Corresponding_transcript | F54A5.1.1 | ||||||||
Other_sequence (16) | |||||||||
Associated_feature (17) | |||||||||
Transcription_factor | WBTranscriptionFactor001020 | ||||||||
Experimental_info | RNAi_result | WBRNAi00048212 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00116551 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003761 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003235 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032730 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048213 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7580 | ||||||||
Expr15622 | |||||||||
Expr1022153 | |||||||||
Expr1038100 | |||||||||
Expr1152019 | |||||||||
Expr1200322 | |||||||||
Expr2012514 | |||||||||
Expr2030753 | |||||||||
Drives_construct | WBCnstr00012725 | ||||||||
WBCnstr00026279 | |||||||||
Construct_product | WBCnstr00026279 | ||||||||
WBCnstr00038799 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (163) | |||||||||
Interaction (13) | |||||||||
Anatomy_function | WBbtf0563 | ||||||||
WBbtf0564 | |||||||||
Map_info | Map | I | Position | -17.4134 | Error | 0.002357 | |||
Positive | Positive_clone | F54A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00037048 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00060123 | |||||||||
WBPaper00061738 | |||||||||
WBPaper00064339 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |