WormBase Tree Display for Gene: WBGene00018849
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| WBGene00018849 | SMap | S_parent | Sequence | F55A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spt-16 | Person_evidence | WBPerson7256 | |||||
| WBPerson22429 | |||||||||
| Sequence_name | F55A3.3 | ||||||||
| Molecular_name | F55A3.3 | ||||||||
| F55A3.3.1 | |||||||||
| CE17113 | |||||||||
| Other_name | phi-16 | Person_evidence | WBPerson2582 | ||||||
| F55A3.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F55A3.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | spt-16 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Apr 2017 11:17:23 | WBPerson2970 | Name_change | CGC_name | spt-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spt | ||||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP1648 | ||||||||
| CEOP1900 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable nucleosome binding activity. Involved in positive regulation of chromosome segregation and regulation of embryonic development. Located in nucleus. Expressed in several structures, including intestine. Is an ortholog of human SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070469 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11465) | ||||
| Molecular_info | Corresponding_CDS | F55A3.3 | |||||||
| Corresponding_transcript | F55A3.3.1 | ||||||||
| Other_sequence (57) | |||||||||
| Associated_feature | WBsf656910 | ||||||||
| WBsf985096 | |||||||||
| WBsf1010593 | |||||||||
| WBsf218485 | |||||||||
| WBsf218486 | |||||||||
| Transcription_factor | WBTranscriptionFactor000289 | ||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr13853 | ||||||||
| Expr15307 | |||||||||
| Expr1018773 | |||||||||
| Expr1038133 | |||||||||
| Expr1152216 | |||||||||
| Expr2016098 | |||||||||
| Expr2034333 | |||||||||
| Drives_construct | WBCnstr00026242 | ||||||||
| Construct_product | WBCnstr00026242 | ||||||||
| WBCnstr00042161 | |||||||||
| Regulate_expr_cluster | WBPaper00055013:spt-16(RNAi)_downregulated | ||||||||
| WBPaper00055013:spt-16(RNAi)_upregulated | |||||||||
| Antibody | WBAntibody00002848 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (304) | |||||||||
| Map_info | Map | I | Position | 5.15928 | |||||
| Positive | Positive_clone | F55A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046148 | |||||||||
| WBPaper00046427 | |||||||||
| WBPaper00047473 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055478 | |||||||||
| WBPaper00057867 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
