WormBase Tree Display for Gene: WBGene00018860
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| WBGene00018860 | SMap | S_parent | Sequence | F55A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vpat-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F55A4.8 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F55A4.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | vpat-1 | ||||||||
| DB_info | Database | AceView | gene | XB658 | |||||
| WormQTL | gene | WBGene00018860 | |||||||
| WormFlux | gene | WBGene00018860 | |||||||
| NDB | locus_tag | CELE_F55A4.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018860|UniProtKB=H2KYF2 | |||||||
| family | PTHR23506 | ||||||||
| NCBI | gene | 180457 | |||||||
| RefSeq | protein | NM_001129679.4 | |||||||
| NM_171626.7 | |||||||||
| NM_171625.6 | |||||||||
| NM_171624.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF313494 | |||||||
| TrEMBL | UniProtAcc | Q8MPU6 | |||||||
| H2KYF2 | |||||||||
| A8WFM4 | |||||||||
| H2KYF3 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYF2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Nov 2016 11:06:21 | WBPerson2970 | Name_change | CGC_name | vpat-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vpat | ||||||||
| Allele (95) | |||||||||
| Strain | WBStrain00003054 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005327 | ||||||||
| 00005328 | |||||||||
| 00005329 | |||||||||
| 00021547 | |||||||||
| 00123853 | |||||||||
| 00123854 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00000295 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006756 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00008793 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012170 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012280 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013996 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020888 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020889 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of human SLC18B1 (solute carrier family 18 member B1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55A4.8a | |||||||
| F55A4.8b | |||||||||
| F55A4.8c | |||||||||
| F55A4.8d | |||||||||
| Corresponding_CDS_history | F55A4.8a:wp184 | ||||||||
| F55A4.8c:wp184 | |||||||||
| Corresponding_transcript | F55A4.8a.1 | ||||||||
| F55A4.8b.1 | |||||||||
| F55A4.8c.1 | |||||||||
| F55A4.8d.1 | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf653682 | ||||||||
| WBsf670097 | |||||||||
| WBsf670098 | |||||||||
| WBsf1003928 | |||||||||
| WBsf236993 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048441 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015688 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1875 | ||||||||
| Expr6196 | |||||||||
| Expr1011043 | |||||||||
| Expr1038138 | |||||||||
| Expr1152227 | |||||||||
| Expr2018007 | |||||||||
| Expr2036144 | |||||||||
| Drives_construct | WBCnstr00003551 | ||||||||
| WBCnstr00026236 | |||||||||
| Construct_product | WBCnstr00026236 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction | WBInteraction000151429 | ||||||||
| WBInteraction000153109 | |||||||||
| WBInteraction000277907 | |||||||||
| WBInteraction000429598 | |||||||||
| WBInteraction000472539 | |||||||||
| Map_info | Positive | Positive_clone | F55A4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -18.7929 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
