WormBase Tree Display for Gene: WBGene00019361
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| WBGene00019361 | SMap | S_parent | Sequence | K03E5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clik-3 | Person_evidence | WBPerson625 | |||||
| Sequence_name | K03E5.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_K03E5.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | clik-3 | ||||||||
| DB_info | Database | AceView | gene | 1D991 | |||||
| WormQTL | gene | WBGene00019361 | |||||||
| WormFlux | gene | WBGene00019361 | |||||||
| NDB | locus_tag | CELE_K03E5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019361|UniProtKB=O61848 | |||||||
| family | PTHR18959 | ||||||||
| NCBI | gene | 186951 | |||||||
| RefSeq | protein | NM_001047209.5 | |||||||
| NM_001026364.5 | |||||||||
| NM_001262437.2 | |||||||||
| NM_001026365.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF315722 | |||||||
| TrEMBL | UniProtAcc | Q2MGE5 | |||||||
| H2KZW0 | |||||||||
| O61848 | |||||||||
| H2KZW1 | |||||||||
| UniProt_GCRP | UniProtAcc | O61848 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Jun 2018 12:45:25 | WBPerson1983 | Name_change | CGC_name | clik-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clik | ||||||||
| Allele (90) | |||||||||
| Strain | WBStrain00031014 | ||||||||
| WBStrain00031020 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00000777 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000778 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006819 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016898 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020808 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000780 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABaraapapaa; alimentary muscle; distal tip cell; head mesodermal cell; and neurons based on RNA-seq; tiling array; proteomic; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and let-7 based on RNA-seq; proteomic; and microarray studies. Is affected by fifteen chemicals including rotenone; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Calponin family repeat and Calponin repeat. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K03E5.2a | |||||||
| K03E5.2b | |||||||||
| K03E5.2c | |||||||||
| K03E5.2d | |||||||||
| Corresponding_CDS_history | K03E5.2:wp131 | ||||||||
| K03E5.2:wp133 | |||||||||
| Corresponding_transcript | K03E5.2a.1 | ||||||||
| K03E5.2b.1 | |||||||||
| K03E5.2c.1 | |||||||||
| K03E5.2d.1 | |||||||||
| Other_sequence (87) | |||||||||
| Associated_feature | WBsf643140 | ||||||||
| WBsf717475 | |||||||||
| WBsf983139 | |||||||||
| WBsf983140 | |||||||||
| WBsf1009501 | |||||||||
| WBsf1009502 | |||||||||
| WBsf217392 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049831 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003906 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018839 | ||||||||
| Expr1153545 | |||||||||
| Expr2004739 | |||||||||
| Expr2022962 | |||||||||
| Drives_construct | WBCnstr00025888 | ||||||||
| Construct_product | WBCnstr00025888 | ||||||||
| Microarray_results (42) | |||||||||
| Expression_cluster (189) | |||||||||
| Interaction | WBInteraction000552804 | ||||||||
| WBInteraction000572434 | |||||||||
| WBInteraction000572725 | |||||||||
| WBInteraction000578346 | |||||||||
| WBInteraction000578472 | |||||||||
| WBInteraction000583625 | |||||||||
| WBInteraction000583997 | |||||||||
| Map_info | Map | I | Position | -3.73468 | |||||
| Positive | Positive_clone | K03E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00046461 | ||||||||
| WBPaper00055300 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
