WormBase Tree Display for Gene: WBGene00019434
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| WBGene00019434 | SMap | S_parent | Sequence | K06A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nmtn-1 | Paper_evidence | WBPaper00041006 | |||||
| Sequence_name | K06A5.8 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_K06A5.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nmtn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 27 Apr 2012 17:06:28 | WBPerson2970 | Name_change | CGC_name | nmtn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nmtn | ||||||||
| Allele (175) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaapppa; ABalapaaaa; ABalapaapa; germ line; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and rrf-3 based on microarray and RNA-seq studies. Is affected by eleven chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: WD domain, G-beta repeat; WD repeat-containing protein 47; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of human WDR47 (WD repeat domain 47). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K06A5.8a | |||||||
| K06A5.8b | |||||||||
| K06A5.8d | |||||||||
| Corresponding_CDS_history | K06A5.8c:wp145 | ||||||||
| Corresponding_transcript | K06A5.8a.1 | ||||||||
| K06A5.8b.1 | |||||||||
| K06A5.8b.2 | |||||||||
| K06A5.8d.1 | |||||||||
| K06A5.8d.2 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf649239 | ||||||||
| WBsf649240 | |||||||||
| WBsf664338 | |||||||||
| WBsf664339 | |||||||||
| WBsf664340 | |||||||||
| WBsf983947 | |||||||||
| WBsf1009961 | |||||||||
| WBsf1009962 | |||||||||
| WBsf219593 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1011513 | ||||||||
| Expr1038398 | |||||||||
| Expr1153727 | |||||||||
| Expr2014336 | |||||||||
| Expr2032577 | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | 1.14897 | |||||
| Positive | Positive_clone | K06A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041006 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064720 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
