WormBase Tree Display for Gene: WBGene00019888
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| WBGene00019888 | SMap | S_parent | Sequence | R05F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | btbd-10 | Paper_evidence | WBPaper00040837 | |||||
| Sequence_name | R05F9.1 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | snpc-1.4 | Person_evidence | WBPerson2290 | ||||||
| CELE_R05F9.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | btbd-10 | ||||||||
| DB_info | Database | AceView | gene | 2F201 | |||||
| WormQTL | gene | WBGene00019888 | |||||||
| WormFlux | gene | WBGene00019888 | |||||||
| NDB | locus_tag | CELE_R05F9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019888|UniProtKB=Q21747 | |||||||
| family | PTHR21637 | ||||||||
| NCBI | gene | 173847 | |||||||
| RefSeq | protein | NM_001393055.1 | |||||||
| NM_170983.7 | |||||||||
| NM_170984.4 | |||||||||
| NM_001381405.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF314369 | |||||||
| TrEMBL | UniProtAcc | Q21748 | |||||||
| Q86NF2 | |||||||||
| Q21747 | |||||||||
| Q7JP41 | |||||||||
| UniProt_GCRP | UniProtAcc | Q21747 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-1.4 | ||||
| 3 | 03 Mar 2014 15:36:02 | WBPerson2970 | Name_change | CGC_name | btbd-10 | ||||
| Other_name | snpc-1.4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | btbd | ||||||||
| Allele (95) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072644 | ||||||||
| 00072645 | |||||||||
| 00072646 | |||||||||
| 00072647 | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in positive regulation of phosphorylation. Predicted to be located in cytoplasm. Expressed in hypodermal cell; intestine; pharyngeal neurons; and pharyngeal-intestinal valve. Is an ortholog of human BTBD10 (BTB domain containing 10) and KCTD20 (potassium channel tetramerization domain containing 20). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R05F9.1a | |||||||
| R05F9.1b | |||||||||
| R05F9.1c | |||||||||
| R05F9.1d | |||||||||
| Corresponding_CDS_history | R05F9.1d:wp274 | ||||||||
| Corresponding_transcript | R05F9.1a.1 | ||||||||
| R05F9.1b.1 | |||||||||
| R05F9.1c.1 | |||||||||
| R05F9.1c.2 | |||||||||
| R05F9.1c.3 | |||||||||
| R05F9.1c.4 | |||||||||
| R05F9.1d.1 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061563 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061686 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017456 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009034 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034616 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113564 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1399 | ||||||||
| Expr142 | |||||||||
| Expr6461 | |||||||||
| Expr1016089 | |||||||||
| Expr1038628 | |||||||||
| Expr1155002 | |||||||||
| Expr2009678 | |||||||||
| Expr2027917 | |||||||||
| Drives_construct | WBCnstr00004415 | ||||||||
| WBCnstr00025519 | |||||||||
| Construct_product | WBCnstr00025519 | ||||||||
| Microarray_results (52) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (62) | |||||||||
| Map_info | Map | II | Position | -2.92376 | |||||
| Positive | Positive_clone | R05F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040837 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064898 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
