WormBase Tree Display for Gene: WBGene00019963
expand all nodes | collapse all nodes | view schema
WBGene00019963 | SMap | S_parent | Sequence | R08E5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rips-1 | Person_evidence | WBPerson2857 | |||||
Sequence_name | R08E5.3 | ||||||||
Molecular_name | R08E5.3 | ||||||||
R08E5.3.1 | |||||||||
CE12576 | |||||||||
Other_name | CELE_R08E5.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | rips-1 | ||||||||
DB_info | Database | AceView | gene | 5E251 | |||||
WormQTL | gene | WBGene00019963 | |||||||
WormFlux | gene | WBGene00019963 | |||||||
NDB | locus_tag | CELE_R08E5.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019963|UniProtKB=O01593 | |||||||
family | PTHR45581 | ||||||||
NCBI | gene | 178795 | |||||||
RefSeq | protein | NM_071644.8 | |||||||
TREEFAM | TREEFAM_ID | TF314672 | |||||||
TrEMBL | UniProtAcc | O01593 | |||||||
UniProt_GCRP | UniProtAcc | O01593 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Dec 2021 11:50:30 | WBPerson1983 | Name_change | CGC_name | rips-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rips | ||||||||
Allele (124) | |||||||||
Possibly_affected_by (13) | |||||||||
Strain | WBStrain00052775 | ||||||||
WBStrain00055595 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00025126 | ||||||||
00025127 | |||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00019675 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019961 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019968 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000765 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008743 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015450 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00018811 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022781 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable methyltransferase activity. Predicted to be involved in methylation. Expressed in hypodermis and intestine. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R08E5.3 | |||||||
Corresponding_transcript | R08E5.3.1 | ||||||||
Other_sequence (38) | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00017594 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00116064 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117203 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051554 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034753 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3370 | ||||||||
Expr3385 | |||||||||
Expr16227 | |||||||||
Expr1023341 | |||||||||
Expr1038673 | |||||||||
Expr1155232 | |||||||||
Expr2005497 | |||||||||
Expr2023717 | |||||||||
Drives_construct | WBCnstr00011367 | ||||||||
WBCnstr00025463 | |||||||||
WBCnstr00042841 | |||||||||
Construct_product | WBCnstr00025463 | ||||||||
WBCnstr00042841 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (353) | |||||||||
Interaction | WBInteraction000281151 | ||||||||
WBInteraction000375584 | |||||||||
WBInteraction000564178 | |||||||||
WBInteraction000570829 | |||||||||
WBInteraction000570907 | |||||||||
WBInteraction000586436 | |||||||||
Map_info | Map | V | Position | -7.99967 | |||||
Positive | Positive_clone | R08E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026629 | ||||||||
WBPaper00063962 | |||||||||
WBPaper00064568 | |||||||||
WBPaper00065331 | |||||||||
WBPaper00066133 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |