WormBase Tree Display for Gene: WBGene00020006
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| WBGene00020006 | SMap | S_parent | Sequence | R11E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | set-15 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | R11E3.4 | ||||||||
| Molecular_name | R11E3.4 | ||||||||
| R11E3.4.1 | |||||||||
| CE48647 | |||||||||
| R11E3.4.2 | |||||||||
| R11E3.4.3 | |||||||||
| Other_name | CELE_R11E3.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | set-15 | ||||||||
| DB_info | Database | AceView | gene | 4F536 | |||||
| WormQTL | gene | WBGene00020006 | |||||||
| WormFlux | gene | WBGene00020006 | |||||||
| NDB | locus_tag | CELE_R11E3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020006|UniProtKB=Q9TYX6 | |||||||
| family | PTHR47250 | ||||||||
| NCBI | gene | 187813 | |||||||
| RefSeq | protein | NM_001383087.1 | |||||||
| TREEFAM | TREEFAM_ID | TF321419 | |||||||
| TrEMBL | UniProtAcc | Q9TYX6 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TYX6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-15 | ||||
| 3 | 27 Sep 2013 09:09:13 | WBPerson4025 | Event | Split_into | WBGene00235374 | ||||
| Split_into | WBGene00235374 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00033081 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097742 | ||||||||
| Ortholog (44) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | set-15 encodes a SET domain-containing protein required for normally short lifespan; SET-15 has no non-nematode orthologs, but several paralogs (SET-6, SET-13, SET-19, SET-20, SET-21, and SET-32); set-15(RNAi) results in an extended lifespan. | Paper_evidence | WBPaper00026643 | |||||
| WBPaper00030864 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 18 Jan 2013 00:00:00 | ||||||||
| Automated_description | Involved in determination of adult lifespan. Expressed in intestine and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R11E3.4 | |||||||
| Corresponding_CDS_history | R11E3.4:wp239 | ||||||||
| Corresponding_transcript | R11E3.4.1 | ||||||||
| R11E3.4.2 | |||||||||
| R11E3.4.3 | |||||||||
| Other_sequence | CRC10230_1 | ||||||||
| CRC07351_1 | |||||||||
| CR01717 | |||||||||
| Associated_feature | WBsf667913 | ||||||||
| WBsf996393 | |||||||||
| WBsf996394 | |||||||||
| WBsf1017312 | |||||||||
| WBsf230015 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113450 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017753 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091524 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051790 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103484 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090746 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14383 | ||||||||
| Expr1011869 | |||||||||
| Expr1038687 | |||||||||
| Expr1155451 | |||||||||
| Expr2015759 | |||||||||
| Expr2033992 | |||||||||
| Microarray_results | SMD_R11E3.4 | ||||||||
| 179737_at | |||||||||
| Aff_R11E3.4 | |||||||||
| GPL14144_R11E3.4_1500-1559_0.894_14_A | |||||||||
| GPL19516_CGZ0031931 | |||||||||
| GPL21109_R11E3.4 | |||||||||
| GPL3518_CE19546 | |||||||||
| GPL8673_R11E3_4P00926 | |||||||||
| GPL8673_R11E3_4P01453 | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction | WBInteraction000186028 | ||||||||
| WBInteraction000251760 | |||||||||
| WBInteraction000290592 | |||||||||
| WBInteraction000359292 | |||||||||
| WBInteraction000408859 | |||||||||
| WBInteraction000425636 | |||||||||
| WBInteraction000469864 | |||||||||
| Map_info | Map | IV | Position | 0.998275 | Error | 0.026122 | |||
| Positive | Positive_clone | R11E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00043077 | |||||||||
| WBPaper00064543 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
