WormBase Tree Display for Gene: WBGene00020130
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| WBGene00020130 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | igcm-2 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | SSSD1.1 | ||||||||
| Molecular_name | SSSD1.1a | ||||||||
| SSSD1.1a.1 | |||||||||
| CE53521 | |||||||||
| SSSD1.1b | |||||||||
| CE53666 | |||||||||
| SSSD1.1b.1 | |||||||||
| Other_name | CELE_SSSD1.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | igcm-2 | ||||||||
| DB_info | Database | AceView | gene | XG998 | |||||
| WormQTL | gene | WBGene00020130 | |||||||
| WormFlux | gene | WBGene00020130 | |||||||
| NDB | locus_tag | CELE_SSSD1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020130|UniProtKB=Q22040 | |||||||
| family | PTHR11640 | ||||||||
| NCBI | gene | 180913 | |||||||
| RefSeq | protein | NM_001375052.3 | |||||||
| NM_001375051.2 | |||||||||
| TrEMBL | UniProtAcc | A0A5E4LXP4 | |||||||
| A0A5E4M2E1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A5E4LXP4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | igcm-2 | ||||
| 3 | 25 Jul 2019 14:59:35 | WBPerson4025 | Event | Acquires_merge | WBGene00044572 | ||||
| Acquires_merge | WBGene00044572 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | igcm | ||||||||
| Allele (194) | |||||||||
| Strain | WBStrain00032059 | ||||||||
| WBStrain00037806 | |||||||||
| WBStrain00037897 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004037 | ||||||||
| 00004038 | |||||||||
| 00004039 | |||||||||
| 00004040 | |||||||||
| 00004041 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | igcm-2 encodes a protein containing immunoglobulin and fibronectin repeats; igcm-2 promoter::gfp fusions are expressed in the PVT interneuron, in some head neurons, and in the pharynx and intestine. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 25 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in cell-cell junction. Expressed in several structures, including PVT; gonad; head neurons; intestine; and pharynx. Is an ortholog of human IGSF9 (immunoglobulin superfamily member 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | SSSD1.1a | |||||||
| SSSD1.1b | |||||||||
| Corresponding_CDS_history | SSSD1.1:wp115 | ||||||||
| SSSD1.1:wp230 | |||||||||
| SSSD1.1:wp272 | |||||||||
| Corresponding_transcript | SSSD1.1a.1 | ||||||||
| SSSD1.1b.1 | |||||||||
| Other_sequence | HBC20452_1 | ||||||||
| EX916051.1 | |||||||||
| Oden_isotig20737 | |||||||||
| Dviv_isotig24320 | |||||||||
| Associated_feature | WBsf670622 | ||||||||
| WBsf670623 | |||||||||
| WBsf237477 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052062 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00001445 | ||||||||
| WBCnstr00001446 | |||||||||
| WBCnstr00013562 | |||||||||
| WBCnstr00023459 | |||||||||
| WBCnstr00025354 | |||||||||
| Construct_product | WBCnstr00023459 | ||||||||
| WBCnstr00025354 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction | WBInteraction000041662 | ||||||||
| WBInteraction000050099 | |||||||||
| WBInteraction000125845 | |||||||||
| WBInteraction000172488 | |||||||||
| WBInteraction000343538 | |||||||||
| WBInteraction000373693 | |||||||||
| WBInteraction000449393 | |||||||||
| Map_info | Map | X | Position | -2.9235 | Error | 0.002636 | |||
| Positive | Positive_clone | SSSD1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5144 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
