WormBase Tree Display for Gene: WBGene00020300
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| WBGene00020300 | SMap | S_parent | Sequence | T07A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ssna-1 | Person_evidence | WBPerson728 | |||||
| Sequence_name | T07A9.13 | ||||||||
| Molecular_name | T07A9.13a | ||||||||
| T07A9.13a.1 | |||||||||
| CE48839 | |||||||||
| T07A9.13b | |||||||||
| CE37788 | |||||||||
| T07A9.13b.1 | |||||||||
| Other_name | tag-261 | ||||||||
| CELE_T07A9.13 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | ssna-1 | ||||||||
| DB_info | Database | AceView | gene | 4B143 | |||||
| WormQTL | gene | WBGene00020300 | |||||||
| WormFlux | gene | WBGene00020300 | |||||||
| NDB | locus_tag | CELE_T07A9.13 | |||||||
| NCBI | gene | 176861 | |||||||
| RefSeq | protein | NM_001028190.4 | |||||||
| NM_001028191.9 | |||||||||
| TREEFAM | TREEFAM_ID | TF328451 | |||||||
| TrEMBL | UniProtAcc | Q95X71 | |||||||
| Q5F4U5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q5F4U5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 06 Jul 2007 15:38:46 | WBPerson2970 | Name_change | CGC_name | tag-261 | ||||
| 3 | 15 Jul 2019 14:29:07 | WBPerson1983 | Name_change | CGC_name | ssna-1 | ||||
| Other_name | tag-261 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssna | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00036053 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP4622 | ||||||||
| Ortholog (26) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABaraapapp; ABaraapppp; anterior hypodermis; germ line; and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on RNA-seq and microarray studies. Is affected by eight chemicals including rotenone; Rifampin; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07A9.13a | |||||||
| T07A9.13b | |||||||||
| Corresponding_CDS_history | T07A9.13:wp82 | ||||||||
| T07A9.13:wp135 | |||||||||
| T07A9.13a:wp239 | |||||||||
| Corresponding_transcript | T07A9.13a.1 | ||||||||
| T07A9.13b.1 | |||||||||
| Other_sequence | CRC08741_1 | ||||||||
| Tcol_isotig24356 | |||||||||
| CBC02297_1 | |||||||||
| CR00238 | |||||||||
| Associated_feature | WBsf645753 | ||||||||
| WBsf227835 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052700 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1016062 | ||||||||
| Expr1038845 | |||||||||
| Expr1156310 | |||||||||
| Expr2017251 | |||||||||
| Expr2035387 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (95) | |||||||||
| SAGE_tag | SAGE:catttgcattcggagga | Strand | Antisense | ||||||
| Interaction | WBInteraction000581158 | ||||||||
| Map_info | Map | IV | Position | -26.2298 | Error | 0.008614 | |||
| Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Previously in the tag gene class | |||||||||
| Method | Gene |
