WormBase Tree Display for Gene: WBGene00020448

WBGene00020448 SMap: S_parent: Sequence: T12B5
  Identity: Version: 2
    Name: CGC_name: fbxa-51 Person_evidence: WBPerson655
      Sequence_name: T12B5.1
      Molecular_name: T12B5.1
        T12B5.1.1
        CE20059
      Other_name: CELE_T12B5.1 Accession_evidence: NDB BX284603
      Public_name: fbxa-51
    DB_info: Database: AceView gene 3B579
        WormQTL gene WBGene00020448
        WormFlux gene WBGene00020448
        NDB locus_tag CELE_T12B5.1
        Panther gene CAEEL|WormBase=WBGene00020448|UniProtKB=Q9TZ19
          family PTHR23015
        NCBI gene 188440
        RefSeq protein NM_064906.2
        TREEFAM TREEFAM_ID TF322360
        TrEMBL UniProtAcc Q9TZ19
        UniProt_GCRP UniProtAcc Q9TZ19
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-51
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (168)
    RNASeq_FPKM (74)
    Ortholog (27)
    Paralog (224)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including ABalppppppp; ABplaapappp; ABpraaapppp; rectal epithelial cell; and rectum based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including levamisole; Psoralens; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T12B5.1
    Corresponding_transcript: T12B5.1.1
    Associated_feature: WBsf224424
      WBsf224425
  Experimental_info: RNAi_result: WBRNAi00006618 Inferred_automatically: RNAi_primary
      WBRNAi00053178 Inferred_automatically: RNAi_primary
      WBRNAi00018626 Inferred_automatically: RNAi_primary
      WBRNAi00035499 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021974
      Expr1156772
      Expr2011553
      Expr2029791
    Drives_construct: WBCnstr00025132
    Construct_product: WBCnstr00025132
    Microarray_results (15)
    Expression_cluster (112)
    Interaction: WBInteraction000209742
      WBInteraction000394458
  Map_info: Map: III Position: -24.8542 Error: 0.011798
    Positive: Positive_clone: T12B5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene