WormBase Tree Display for Gene: WBGene00020485
expand all nodes | collapse all nodes | view schema
| WBGene00020485 | SMap | S_parent | Sequence | T13C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-54 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T13C5.4 | ||||||||
| Molecular_name | T13C5.4 | ||||||||
| T13C5.4.1 | |||||||||
| CE52003 | |||||||||
| Other_name | CELE_T13C5.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-54 | ||||||||
| DB_info | Database | AceView | gene | XG808 | |||||
| XG806 | |||||||||
| WormQTL | gene | WBGene00020485 | |||||||
| WormFlux | gene | WBGene00020485 | |||||||
| NDB | locus_tag | CELE_T13C5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020485|UniProtKB=Q22459 | |||||||
| family | PTHR24329 | ||||||||
| NCBI | gene | 188474 | |||||||
| RefSeq | protein | NM_001351883.3 | |||||||
| TREEFAM | TREEFAM_ID | TF351612 | |||||||
| TrEMBL | UniProtAcc | Q22459 | |||||||
| UniProt_GCRP | UniProtAcc | Q22459 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-54 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00037901 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00075281 | ||||||||
| 00075282 | |||||||||
| 00075283 | |||||||||
| 00075284 | |||||||||
| 00075285 | |||||||||
| 00075286 | |||||||||
| 00075287 | |||||||||
| 00075288 | |||||||||
| 00075289 | |||||||||
| 00125114 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in neurons. Is an ortholog of several human genes including ESX1 (ESX homeobox 1); RHOXF1 (Rhox homeobox family member 1); and RHOXF2 (Rhox homeobox family member 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T13C5.4 | |||||||
| Corresponding_CDS_history | T13C5.4:wp259 | ||||||||
| Corresponding_transcript | T13C5.4.1 | ||||||||
| Associated_feature | WBsf978650 | ||||||||
| WBsf1005510 | |||||||||
| WBsf1005511 | |||||||||
| WBsf1023072 | |||||||||
| WBsf1023073 | |||||||||
| Transcription_factor | WBTranscriptionFactor000557 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00035537 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018671 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7665 | ||||||||
| Expr15596 | |||||||||
| Expr1020578 | |||||||||
| Expr1156845 | |||||||||
| Expr2009893 | |||||||||
| Expr2028133 | |||||||||
| Drives_construct | WBCnstr00012810 | ||||||||
| WBCnstr00025105 | |||||||||
| Construct_product | WBCnstr00016836 | ||||||||
| WBCnstr00025105 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (44) | |||||||||
| Interaction (74) | |||||||||
| Map_info | Map | X | Position | -3.48543 | |||||
| Positive | Positive_clone | T13C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064718 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
