WormBase Tree Display for Gene: WBGene00020555
expand all nodes | collapse all nodes | view schema
| WBGene00020555 | SMap | S_parent | Sequence | T19A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-219 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T19A5.5 | ||||||||
| Molecular_name | T19A5.5 | ||||||||
| T19A5.5.1 | |||||||||
| CE51501 | |||||||||
| Other_name | CELE_T19A5.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-219 | ||||||||
| DB_info | Database | AceView | gene | 5J442 | |||||
| WormQTL | gene | WBGene00020555 | |||||||
| WormFlux | gene | WBGene00020555 | |||||||
| NDB | locus_tag | CELE_T19A5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020555|UniProtKB=Q9UB40 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 3565145 | |||||||
| RefSeq | protein | NM_001322579.3 | |||||||
| TrEMBL | UniProtAcc | A0A131MCX9 | |||||||
| UniProt_GCRP | UniProtAcc | A0A131MCX9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-219 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (94) | |||||||||
| Strain | WBStrain00002528 | ||||||||
| WBStrain00002529 | |||||||||
| WBStrain00002626 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002171 | ||||||||
| 00002172 | |||||||||
| 00002173 | |||||||||
| 00002174 | |||||||||
| 00125157 | |||||||||
| 00125158 | |||||||||
| 00125159 | |||||||||
| 00125160 | |||||||||
| Ortholog (24) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in amphid neurons; ciliated neurons; head neurons; and sensory neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T19A5.5 | |||||||
| Corresponding_CDS_history | T19A5.5a:wp274 | ||||||||
| Corresponding_transcript | T19A5.5.1 | ||||||||
| Other_sequence | MC03270 | ||||||||
| MHC05760_1 | |||||||||
| MCC02912_1 | |||||||||
| MH00949 | |||||||||
| Associated_feature | WBsf034309 | ||||||||
| WBsf978346 | |||||||||
| WBsf234161 | |||||||||
| WBsf234162 | |||||||||
| Transcription_factor | WBTranscriptionFactor000917 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00018813 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053483 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram740 | ||||||||
| Chronogram1432 | |||||||||
| Expr6707 | |||||||||
| Expr6708 | |||||||||
| Expr10138 | |||||||||
| Expr1026868 | |||||||||
| Expr1157048 | |||||||||
| Expr2014122 | |||||||||
| Expr2032361 | |||||||||
| Drives_construct | WBCnstr00003104 | ||||||||
| WBCnstr00003105 | |||||||||
| WBCnstr00004543 | |||||||||
| WBCnstr00025056 | |||||||||
| Construct_product | WBCnstr00025056 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (37) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | V | Position | 1.88249 | Error | 0.002366 | |||
| Positive | Positive_clone | T19A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5337 | |||||||
| 5429 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00062625 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
