WormBase Tree Display for Gene: WBGene00021037
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| WBGene00021037 | SMap | S_parent | Sequence | W05F2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fbxa-203 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | W05F2.5 | |||||||||
| Molecular_name | W05F2.5 | |||||||||
| Other_name | CELE_W05F2.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | fbxa-203 | |||||||||
| DB_info | Database | AceView | gene | 1D941 | ||||||
| WormQTL | gene | WBGene00021037 | ||||||||
| WormFlux | gene | WBGene00021037 | ||||||||
| NDB | locus_tag | CELE_W05F2.5 | ||||||||
| NCBI | gene | 189217 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-203 | |||||
| 3 | 03 Sep 2014 17:03:17 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fbxa | |||||||||
| Allele (37) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Contained_in_operon | CEOP1092 | |||||||||
| Ortholog | WBGene00023954 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00033413 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00035626 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00037960 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00041155 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00041890 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in germ line; germline precursor cell; and head mesodermal cell based on RNA-seq studies. Is affected by several genes including hsf-1; rrf-3; and sir-2.1 based on microarray and RNA-seq studies. Is affected by six chemicals including manganese chloride; stavudine; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | W05F2.5:wp213 | ||||||||
| W05F2.5:wp245 | ||||||||||
| Corresponding_pseudogene | W05F2.5 | |||||||||
| Other_sequence | JI465677.1 | |||||||||
| Experimental_info | Expr_pattern | Expr1012924 | ||||||||
| Expr1158371 | ||||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (81) | ||||||||||
| Map_info | Map | I | Position | -3.78754 | Error | 0.014713 | ||||
| Positive | Positive_clone | W05F2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00012854 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
