WormBase Tree Display for Gene: WBGene00021075
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| WBGene00021075 | SMap | S_parent | Sequence | W07E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sms-5 | Paper_evidence | WBPaper00057293 | |||||
| Person_evidence | WBPerson1820 | ||||||||
| Author_evidence | |||||||||
| Sequence_name | W07E6.3 | ||||||||
| Molecular_name | W07E6.3b | ||||||||
| W07E6.3b.1 | |||||||||
| CE49035 | |||||||||
| W07E6.3c | |||||||||
| CE48509 | |||||||||
| W07E6.3c.1 | |||||||||
| Other_name | CELE_W07E6.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sms-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Dec 2018 16:50:34 | WBPerson1983 | Name_change | CGC_name | sms-5, | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sms | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00032604 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00004892 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004893 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004894 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018735 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to be located in membrane. Expressed in marginal cell; pharyngeal muscle cell; pharynx; and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W07E6.3b | |||||||
| W07E6.3c | |||||||||
| Corresponding_CDS_history | W07E6.3a:wp250 | ||||||||
| Corresponding_transcript | W07E6.3b.1 | ||||||||
| W07E6.3c.1 | |||||||||
| Other_sequence (192) | |||||||||
| Associated_feature | WBsf717621 | ||||||||
| WBsf220759 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054951 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019699 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14868 | ||||||||
| Expr14869 | |||||||||
| Expr1019120 | |||||||||
| Expr1158485 | |||||||||
| Expr2006841 | |||||||||
| Expr2025066 | |||||||||
| Drives_construct | WBCnstr00024694 | ||||||||
| WBCnstr00041565 | |||||||||
| Construct_product | WBCnstr00024694 | ||||||||
| WBCnstr00041565 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction | WBInteraction000423653 | ||||||||
| WBInteraction000457506 | |||||||||
| Map_info | Map | II | Position | -15.6005 | |||||
| Positive | Positive_clone | W07E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057293 | |||||||||
| WBPaper00060052 | |||||||||
| WBPaper00061422 | |||||||||
| WBPaper00063285 | |||||||||
| WBPaper00066145 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
