WormBase Tree Display for Gene: WBGene00021222
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| WBGene00021222 | SMap | S_parent | Sequence | Y19D10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irld-53 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y19D10A.7 | ||||||||
| Molecular_name (16) | |||||||||
| Other_name | Y19D10A.h | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y19D10A.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | irld-53 | ||||||||
| DB_info | Database | AceView | gene | 5C824 | |||||
| WormQTL | gene | WBGene00021222 | |||||||
| WormFlux | gene | WBGene00021222 | |||||||
| NDB | locus_tag | CELE_Y19D10A.7 | |||||||
| NCBI | gene | 189485 | |||||||
| RefSeq | protein | NM_001316836.1 | |||||||
| NM_001316837.1 | |||||||||
| NM_001316775.1 | |||||||||
| NM_001316835.1 | |||||||||
| NR_133585.1 | |||||||||
| NR_133586.1 | |||||||||
| NR_133588.1 | |||||||||
| NR_133587.1 | |||||||||
| TrEMBL | UniProtAcc | A0A0M7REC9 | |||||||
| A0A0M7RDW6 | |||||||||
| A0A0M7REQ9 | |||||||||
| Q966E0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q966E0 | |||||||
| RNAcentral | URSid | URS00008D5904 | |||||||
| URS00008D7F7D | |||||||||
| URS00008DCEE1 | |||||||||
| URS00008E0B18 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-53 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irld | ||||||||
| Allele | WBVar01499528 | ||||||||
| WBVar01499167 | |||||||||
| WBVar01499537 | |||||||||
| WBVar01585457 | |||||||||
| WBVar01499740 | |||||||||
| WBVar02046235 | |||||||||
| WBVar01971643 | |||||||||
| WBVar01499496 | |||||||||
| WBVar01499316 | |||||||||
| WBVar01500066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (65) | |||||||||
| Paralog (67) | |||||||||
| Structured_description | Automated_description | Enriched in DD neuron; intestine; and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on microarray; quantitative PCR; tiling array; and RNA-seq studies. Is affected by ten chemicals including fluvastatin; Progesterone; and Atrazine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Receptor L domain; Receptor L-domain; and Receptor L-domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y19D10A.7a | |||||||
| Y19D10A.7b | |||||||||
| Y19D10A.7g | |||||||||
| Y19D10A.7h | |||||||||
| Corresponding_transcript | Y19D10A.7c | ||||||||
| Y19D10A.7d | |||||||||
| Y19D10A.7e | |||||||||
| Y19D10A.7f | |||||||||
| Y19D10A.7a.1 | |||||||||
| Y19D10A.7b.1 | |||||||||
| Y19D10A.7g.1 | |||||||||
| Y19D10A.7h.1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032922 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013378 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044725 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048605 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044723 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1159160 | ||||||||
| Drives_construct | WBCnstr00024616 | ||||||||
| Construct_product | WBCnstr00024616 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction | WBInteraction000503278 | ||||||||
| WBInteraction000503790 | |||||||||
| Map_info | Map | V | Position | -14.8601 | |||||
| Positive | Positive_clone | Y19D10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
