WormBase Tree Display for Gene: WBGene00021320
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| WBGene00021320 | SMap | S_parent | Sequence | Y34B4A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y34B4A.4 | |||||||
| Molecular_name | Y34B4A.4a | ||||||||
| Y34B4A.4a.1 | |||||||||
| CE21520 | |||||||||
| Y34B4A.4b | |||||||||
| CE33730 | |||||||||
| Y34B4A.4b.1 | |||||||||
| Other_name | Y34B4A.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y34B4A.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | Y34B4A.4 | ||||||||
| DB_info | Database | AceView | gene | XF889 | |||||
| WormQTL | gene | WBGene00021320 | |||||||
| WormFlux | gene | WBGene00021320 | |||||||
| NDB | locus_tag | CELE_Y34B4A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021320|UniProtKB=H2KZX7 | |||||||
| family | PTHR23113 | ||||||||
| NCBI | gene | 180798 | |||||||
| RefSeq | protein | NM_001029788.4 | |||||||
| NM_001029787.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF317296 | |||||||
| TrEMBL | UniProtAcc | Q86MI5 | |||||||
| H2KZX7 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZX7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (131) | |||||||||
| Strain | WBStrain00033198 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022616 | ||||||||
| 00022617 | |||||||||
| 00022618 | |||||||||
| 00022619 | |||||||||
| 00125704 | |||||||||
| 00125705 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00004254 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004255 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004947 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009100 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017891 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019902 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in Ras protein signal transduction. Predicted to be located in plasma membrane. Is an ortholog of human RAPGEF1 (Rap guanine nucleotide exchange factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y34B4A.4a | |||||||
| Y34B4A.4b | |||||||||
| Corresponding_transcript | Y34B4A.4a.1 | ||||||||
| Y34B4A.4b.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf718581 | ||||||||
| WBsf1005218 | |||||||||
| WBsf1005219 | |||||||||
| WBsf1005220 | |||||||||
| WBsf1005221 | |||||||||
| WBsf1005222 | |||||||||
| WBsf1022929 | |||||||||
| WBsf1022930 | |||||||||
| WBsf235699 | |||||||||
| WBsf235700 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055819 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055818 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017365 | ||||||||
| Expr1039297 | |||||||||
| Expr1159348 | |||||||||
| Expr2007215 | |||||||||
| Expr2025447 | |||||||||
| Drives_construct | WBCnstr00024581 | ||||||||
| Construct_product | WBCnstr00024581 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction | WBInteraction000034679 | ||||||||
| WBInteraction000034680 | |||||||||
| WBInteraction000036595 | |||||||||
| WBInteraction000036600 | |||||||||
| WBInteraction000336724 | |||||||||
| WBInteraction000340325 | |||||||||
| WBInteraction000340330 | |||||||||
| WBInteraction000425639 | |||||||||
| WBInteraction000583880 | |||||||||
| WBInteraction000584255 | |||||||||
| Map_info | Positive | Positive_clone | Y34B4A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -5.89386 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
