WormBase Tree Display for Gene: WBGene00021527
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| WBGene00021527 | SMap | S_parent | Sequence | Y41G9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aakg-3 | Person_evidence | WBPerson11446 | |||||
| WBPerson11445 | |||||||||
| Sequence_name | Y41G9A.3 | ||||||||
| Molecular_name | Y41G9A.3 | ||||||||
| Y41G9A.3.1 | |||||||||
| CE35802 | |||||||||
| Other_name | CELE_Y41G9A.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | aakg-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jul 2010 16:38:16 | WBPerson2970 | Name_change | CGC_name | aakg-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aakg | ||||||||
| Allele (76) | |||||||||
| Possibly_affected_by | WBVar02157239 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095004 | ||||||||
| 00095005 | |||||||||
| 00095006 | |||||||||
| 00095007 | |||||||||
| 00095008 | |||||||||
| 00095009 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00011276 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013732 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00020135 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020633 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | aakg-3 encodes one of five C. elegans AMP kinase (AMPK) gamma regulatory subunits. | Paper_evidence | WBPaper00031352 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in monoatomic ion transport. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nucleotide-activated protein kinase complex. Expressed in alimentary muscle; body wall musculature; head neurons; spermatheca; and ventral nerve cord. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Is an ortholog of human PRKAG1 (protein kinase AMP-activated non-catalytic subunit gamma 1); PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2); and PRKAG3 (protein kinase AMP-activated non-catalytic subunit gamma 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0090101 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9386) | ||||
| DOID:384 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9386) | ||||||
| DOID:0110312 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9386) | ||||||
| DOID:2747 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9386) | ||||||
| Molecular_info | Corresponding_CDS | Y41G9A.3 | |||||||
| Corresponding_CDS_history | Y41G9A.3:wp88 | ||||||||
| Y41G9A.3:wp109 | |||||||||
| Corresponding_transcript | Y41G9A.3.1 | ||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf662573 | ||||||||
| WBsf662574 | |||||||||
| WBsf718537 | |||||||||
| WBsf982136 | |||||||||
| WBsf1004492 | |||||||||
| WBsf1004493 | |||||||||
| WBsf1022550 | |||||||||
| WBsf235430 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056420 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037013 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4940 | ||||||||
| Expr1018863 | |||||||||
| Expr1159904 | |||||||||
| Expr2009058 | |||||||||
| Expr2027294 | |||||||||
| Drives_construct | WBCnstr00012353 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction | WBInteraction000455789 | ||||||||
| WBInteraction000578887 | |||||||||
| WBInteraction000578889 | |||||||||
| WBInteraction000581224 | |||||||||
| Map_info | Map | X | Position | -12.665 | |||||
| Positive | Positive_clone | Y41G9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031003 | ||||||||
| WBPaper00044832 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062543 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
