WormBase Tree Display for Gene: WBGene00021586
expand all nodes | collapse all nodes | view schema
| WBGene00021586 | SMap | S_parent | Sequence | CHROMOSOME_IV | ||
|---|---|---|---|---|---|---|
| Identity (6) | ||||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | clec | |||||
| Allele (51) | ||||||
| RNASeq_FPKM (74) | ||||||
| Ortholog (52) | ||||||
| Paralog (43) | ||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | Y46C8AL.9 | ||||
| Corresponding_CDS_history | Y46C8AL.9:wp88 | |||||
| Y46C8AL.9:wp131 | ||||||
| Y46C8AL.9a:wp124 | ||||||
| Y46C8AL.9a:wp156 | ||||||
| Y46C8AL.9a:wp261 | ||||||
| Y46C8AL.9b:wp156 | ||||||
| Y46C8AL.9b:wp261 | ||||||
| Y46C8AL.9c:wp261 | ||||||
| Y46C8AL.9e:wp261 | ||||||
| Corresponding_transcript | Y46C8AL.9.1 | |||||
| Corresponding_transcript_history | Y46C8AL.9d:wp261 | |||||
| Other_sequence | CBC04507_1 | |||||
| MHC11690_1 | ||||||
| Associated_feature | WBsf645897 | |||||
| WBsf228142 | ||||||
| WBsf228143 | ||||||
| Experimental_info | RNAi_result | WBRNAi00056653 | Inferred_automatically | RNAi_primary | ||
| WBRNAi00020636 | Inferred_automatically | RNAi_primary | ||||
| Expr_pattern | Expr1011611 | |||||
| Expr1160122 | ||||||
| Expr2010207 | ||||||
| Expr2028448 | ||||||
| Microarray_results | SMD_Y46C8_100.C | |||||
| 177232_at | ||||||
| A_12_P112833 | ||||||
| Aff_Y46C8_100.C | ||||||
| GPL14144_Y46C8AL.9b_712-771_0.882_24_A | ||||||
| GPL3518_CE32529 | ||||||
| GPL8673_Y46C8AL_9aP00571 | ||||||
| GPL8673_Y46C8AL_9aP01091 | ||||||
| GPL9450_Y46C8AL.9 | ||||||
| cea2.i.30295 | ||||||
| Expression_cluster (129) | ||||||
| SAGE_tag | SAGE:ccagaagaaa | Strand | Antisense | |||
| SAGE:cacttgtctataatatg | Strand | Sense | ||||
| Unambiguously_mapped | ||||||
| SAGE:cacttgtcta | Strand | Sense | ||||
| Unambiguously_mapped | ||||||
| Map_info (3) | ||||||
| Reference | WBPaper00062388 | |||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | ||||||
| Method | Gene |
