WormBase Tree Display for Gene: WBGene00021586
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WBGene00021586 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (51) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (52) | |||||||
Paralog (43) | |||||||
Structured_description | Automated_description | Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y46C8AL.9 | |||||
Corresponding_CDS_history | Y46C8AL.9:wp88 | ||||||
Y46C8AL.9:wp131 | |||||||
Y46C8AL.9a:wp124 | |||||||
Y46C8AL.9a:wp156 | |||||||
Y46C8AL.9a:wp261 | |||||||
Y46C8AL.9b:wp156 | |||||||
Y46C8AL.9b:wp261 | |||||||
Y46C8AL.9c:wp261 | |||||||
Y46C8AL.9e:wp261 | |||||||
Corresponding_transcript | Y46C8AL.9.1 | ||||||
Corresponding_transcript_history | Y46C8AL.9d:wp261 | ||||||
Other_sequence | CBC04507_1 | ||||||
MHC11690_1 | |||||||
Associated_feature | WBsf645897 | ||||||
WBsf228142 | |||||||
WBsf228143 | |||||||
Experimental_info | RNAi_result | WBRNAi00056653 | Inferred_automatically | RNAi_primary | |||
WBRNAi00020636 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1011611 | ||||||
Expr1160122 | |||||||
Expr2010207 | |||||||
Expr2028448 | |||||||
Microarray_results | SMD_Y46C8_100.C | ||||||
177232_at | |||||||
A_12_P112833 | |||||||
Aff_Y46C8_100.C | |||||||
GPL14144_Y46C8AL.9b_712-771_0.882_24_A | |||||||
GPL3518_CE32529 | |||||||
GPL8673_Y46C8AL_9aP00571 | |||||||
GPL8673_Y46C8AL_9aP01091 | |||||||
GPL9450_Y46C8AL.9 | |||||||
cea2.i.30295 | |||||||
Expression_cluster (129) | |||||||
SAGE_tag | SAGE:ccagaagaaa | Strand | Antisense | ||||
SAGE:cacttgtctataatatg | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:cacttgtcta | Strand | Sense | |||||
Unambiguously_mapped | |||||||
Map_info | Map | IV | Position | -1.2976 | Error | 0.01659 | |
Positive | Positive_clone | Y46C8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00062388 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||
Method | Gene |