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WormBase Tree Display for Gene: WBGene00021799

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Name Class

WBGene00021799SMapS_parentSequenceCHROMOSOME_III
IdentityVersion1
NameSequence_nameY53G8AL.1
Molecular_nameY53G8AL.1
Y53G8AL.1.1
CE40218
Other_nameY53G8AL.cCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y53G8AL.1Accession_evidenceNDBBX284603
Public_nameY53G8AL.1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (189)
RNASeq_FPKM (74)
Ortholog (21)
Structured_descriptionAutomated_descriptionEnriched in neurons and retrovesicular ganglion based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; glp-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including Alovudine; metformin; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SMAD/FHA domain superfamily; FHA domain; and Forkhead-associated (FHA) domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY53G8AL.1
Corresponding_CDS_historyY53G8AL.1:wp88
Y53G8AL.1:wp157
Corresponding_transcriptY53G8AL.1.1
Other_sequenceMPC00858_1
Associated_featureWBsf645014
WBsf981424
WBsf991706
WBsf991707
WBsf991708
WBsf991709
WBsf1014529
WBsf1014530
WBsf1014531
WBsf1014532
Experimental_infoRNAi_resultWBRNAi00037433Inferred_automaticallyRNAi_primary
WBRNAi00057302Inferred_automaticallyRNAi_primary
Expr_patternExpr1016539
Expr1039561
Expr1160738
Expr2007863
Expr2026105
Microarray_results (23)
Expression_clusterWBPaper00035269:cde-1_regulated
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00045486:starvation_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00045861:set-2(ok952)_upregulated
WBPaper00045861:wdr-5(ok1417)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00051265:F1_hrde-1(tm1200)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053321:mes-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055103:thoc-5(wy822)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055944:C.butyricum_vs_OP50_upregulated
WBPaper00056039:efa-6(tm3124)_downregulated
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056218:daf-16(mu86)_downregulated_Day7
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00057265:metaformin_downregulated_OP50
WBPaper00057265:metaformin_downregulated_OP50-MR
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059440:GLP-1_activated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060951:mrpl-2(osa3)_downregulated
WBPaper00061340:ADF
WBPaper00061340:ASG
WBPaper00061340:ASH
WBPaper00061340:ASI
WBPaper00061340:ASJ
WBPaper00061340:ASK
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:fbxa-154_11499-Y44A6D.1
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00062672:let-418(n3536)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064158:xpo-1(RNAi)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064999:miR-229-64-65-66_downregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00065199:Transgeneration-starvation_regulated_fed
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:1_0
WBPaper00065841:47_0
WBPaper00065841:57_1
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00066163:set-2(ok952)_upregulated_N2
cgc4489_group_2
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Embryo_A_Class
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00035560:ahr-1_upregulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_F
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
Map_infoPositivePositive_cloneY53G8ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-7.33172
ReferenceWBPaper00061818
MethodGene