WormBase Tree Display for Gene: WBGene00021862
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WBGene00021862 | SMap | S_parent | Sequence | Y54F10BM | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-48 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y54F10BM.7 | ||||||||
Molecular_name | Y54F10BM.7 | ||||||||
Y54F10BM.7.1 | |||||||||
CE32989 | |||||||||
Other_name | CELE_Y54F10BM.7 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-48 | ||||||||
DB_info | Database | AceView | gene | 3D356 | |||||
WormQTL | gene | WBGene00021862 | |||||||
WormFlux | gene | WBGene00021862 | |||||||
NDB | locus_tag | CELE_Y54F10BM.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021862|UniProtKB=Q95XL3 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 190273 | |||||||
RefSeq | protein | NM_065129.5 | |||||||
TREEFAM | TREEFAM_ID | TF322360 | |||||||
TrEMBL | UniProtAcc | Q95XL3 | |||||||
UniProt_GCRP | UniProtAcc | Q95XL3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-48 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (88) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (17) | |||||||||
Paralog (222) | |||||||||
Structured_description | Automated_description | Is affected by several genes including daf-2; hsf-1; and elt-2 based on RNA-seq and microarray studies. Is affected by twelve chemicals including methylmercuric chloride; Tunicamycin; and D-glucopyranose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y54F10BM.7 | |||||||
Corresponding_CDS_history | Y54F10BM.7:wp91 | ||||||||
Corresponding_transcript | Y54F10BM.7.1 | ||||||||
Other_sequence | JI467155.1 | ||||||||
Associated_feature | WBsf650870 | ||||||||
Experimental_info | RNAi_result | WBRNAi00057419 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1160853 | ||||||||
Expr2011550 | |||||||||
Expr2029788 | |||||||||
Microarray_results | A_12_P114757 | ||||||||
GPL19516_CGZ0049126 | |||||||||
GPL21109_Y54F10BM.7 | |||||||||
GPL3518_CE32989 | |||||||||
GPL8304_CE_WBGene00021862_A | |||||||||
GPL8673_Y54F10BM_7P00045 | |||||||||
GPL8673_Y54F10BM_7P00285 | |||||||||
GPL8673_Y54F10BM_7P00903 | |||||||||
GPL9450_Y54F10BM.7 | |||||||||
cea2.d.07007 | |||||||||
Expression_cluster (102) | |||||||||
Map_info | Map | III | Position | -14.8292 | Error | 0.002597 | |||
Positive | Positive_clone | Y54F10BM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00061938 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |